The genetic basis of epigenetic variation and its consequences for adaptation

P Baduel, E Sasaki - Current Opinion in Plant Biology, 2023 - Elsevier
Recent population genomic studies in plants have shed new light on natural epigenetic
variation by identifying key genetic determinants,“trans modifiers,” that influence epigenetic …

Pennycress domestication and improvement efforts

P Basnet, S Ellison - Crop Science, 2024 - Wiley Online Library
Pennycress (Thlaspi arvense L.) is a winter annual weed species that is distributed globally
in temperate regions. The possibility of pennycress inclusion in the corn–soybean cropping …

DNA methylation in the wild: epigenetic transgenerational inheritance can mediate adaptation in clones of wild strawberry (Fragaria vesca)

I Sammarco, B Díez Rodríguez, D Galanti… - New …, 2024 - Wiley Online Library
Due to the accelerating climate change, it is crucial to understand how plants adapt to rapid
environmental changes. Such adaptation may be mediated by epigenetic mechanisms like …

Epigenomic and transcriptomic persistence of heat stress memory in strawberry (Fragaria vesca)

ME López, B Denoyes, E Bucher - BMC Plant Biology, 2024 - Springer
Background In plants, epigenetic stress memory has so far been found to be largely
transient. Here, we wanted to assess the heritability of heat stress-induced epigenetic and …

Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage

VN Ibañez, M van Antro, C Peña-Ponton… - Journal of …, 2023 - academic.oup.com
DNA methylation in plant genomes occurs in different sequences and genomic contexts that
have very different properties. DNA methylation that occurs in CG (mCG) sequence context …

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

A Nunn, SN Can, C Otto, M Fasold… - NAR genomics and …, 2021 - academic.oup.com
The expanding scope and scale of next generation sequencing experiments in ecological
plant epigenetics brings new challenges for computational analysis. Existing tools built for …

Dynamic evolution of the heterochromatin sensing histone demethylase IBM1

Y Zhang, H Jang, Z Luo, Y Dong, Y Xu… - Plos …, 2024 - journals.plos.org
Heterochromatin is critical for maintaining genome stability, especially in flowering plants,
where it relies on a feedback loop involving the H3K9 methyltransferase, KRYPTONITE …

Quantifying the role of genome size and repeat content in adaptive variation and the architecture of flowering time in Amaranthus tuberculatus

JM Kreiner, S Hnatovska, JR Stinchcombe… - Plos Genetics, 2023 - journals.plos.org
Genome size variation, largely driven by repeat content, is poorly understood within and
among populations, limiting our understanding of its significance for adaptation. Here we …

Transposon dynamics in the emerging oilseed crop Thlaspi arvense

A Contreras-Garrido, D Galanti, A Movilli, C Becker… - Plos …, 2024 - journals.plos.org
Genome evolution is partly driven by the mobility of transposable elements (TEs) which often
leads to deleterious effects, but their activity can also facilitate genetic novelty and catalyze …

Herbivory induced methylation changes in the Lombardy poplar: A comparison of results obtained by epiGBS and WGBS

AN Troyee, C Peña-Ponton, M Medrano… - Plos one, 2023 - journals.plos.org
DNA cytosine methylation is an epigenetic mechanism involved in regulation of plant
responses to biotic and abiotic stress and its ability to change can vary with the sequence …