[HTML][HTML] Protein post-translational modification by lysine succinylation: Biochemistry, biological implications, and therapeutic opportunities

G Zhao, J Zhen, X Liu, J Guo, D Li, J Xie, L Xie - Genes & Diseases, 2023 - Elsevier
Lysine succinylation (Ksuc) is a novel protein post-translational modification (PTM) wherein
a succinyl group modifies a lysine residue. Ksuc leads to significant chemical and structural …

Current computational tools for protein lysine acylation site prediction

Z Qin, H Ren, P Zhao, K Wang, H Liu… - Briefings in …, 2024 - academic.oup.com
As a main subtype of post-translational modification (PTM), protein lysine acylations (PLAs)
play crucial roles in regulating diverse functions of proteins. With recent advancements in …

RMTLysPTM: recognizing multiple types of lysine PTM sites by deep analysis on sequences

L Chen, Y Chen - Briefings in Bioinformatics, 2024 - academic.oup.com
Post-translational modification (PTM) occurs after a protein is translated from ribonucleic
acid. It is an important living creature life phenomenon because it is implicated in almost all …

Cross-Sectional Study for Detection and Risk Factor Analysis of ESBL-Producing Avian Pathogenic Escherichia coli Associated with Backyard Chickens in Pakistan

MA Saeed, M Saqlain, U Waheed… - Antibiotics, 2023 - mdpi.com
The increasing incidence of extended-spectrum β-lactamase (ESBL)-producing Escherichia
(E.) coli in backyard chicken farming in Pakistan is of serious concern. This study aimed to …

FCCCSR_Glu: a semi-supervised learning model based on FCCCSR algorithm for prediction of glutarylation sites

Q Ning, Z Qi, Y Wang, A Deng… - Briefings in …, 2022 - academic.oup.com
Glutarylation is a post-translational modification which plays an irreplaceable role in various
functions of the cell. Therefore, it is very important to accurately identify the glutarylation …

MLysPRED: graph-based multi-view clustering and multi-dimensional normal distribution resampling techniques to predict multiple lysine sites

Y Zuo, Y Hong, X Zeng, Q Zhang… - Briefings in …, 2022 - academic.oup.com
Posttranslational modification of lysine residues, K-PTM, is one of the most popular PTMs.
Some lysine residues in proteins can be continuously or cascaded covalently modified, such …

SIPSC-Kac: Integrating swarm intelligence and protein spatial characteristics for enhanced lysine acetylation site identification

Z Yao, H Shangguan, W Xie, J Liu, S He… - International Journal of …, 2024 - Elsevier
Elucidation of post-translational modifications (PTMs), such as lysine acetylation (Kac), is
crucial for understanding protein function and regulation. Although traditional experimental …

PreMLS: The undersampling technique based on ClusterCentroids to predict multiple lysine sites

Y Zuo, X Fang, J Wan, W He, X Liu… - PLOS Computational …, 2024 - journals.plos.org
The translated protein undergoes a specific modification process, which involves the
formation of covalent bonds on lysine residues and the attachment of small chemical …

Accurately predicting nitrosylated tyrosine sites using probabilistic sequence information

A Rahman, S Ahmed, MAM Hasan, S Ahmad… - Gene, 2022 - Elsevier
Post-translational modification (PTM) is defined as the enzymatic changes of proteins after
the translation process in protein biosynthesis. Nitrotyrosine, which is one of the most …

Impact of Lysine Succinylation on the Biology of Fungi

J Adejor, E Tumukunde, G Li, H Lin, R Xie… - Current Issues in …, 2024 - mdpi.com
Post-translational modifications (PTMs) play a crucial role in protein functionality and the
control of various cellular processes and secondary metabolites (SMs) in fungi. Lysine …