[HTML][HTML] PRC2 facilitates the regulatory topology required for poised enhancer function during pluripotent stem cell differentiation

S Cruz-Molina, P Respuela, C Tebartz, P Kolovos… - Cell stem cell, 2017 - cell.com
Poised enhancers marked by H3K27me3 in pluripotent stem cells have been implicated in
the establishment of somatic expression programs during embryonic stem cell (ESC) …

Organization of the pluripotent genome

PSL Lim, E Meshorer - Cold Spring Harbor perspectives …, 2021 - cshperspectives.cshlp.org
In the past several decades, the establishment of in vitro models of pluripotency has ushered
in a golden era for developmental and stem cell biology. Research in this arena has led to …

Delineating the heterogeneity of matrix-directed differentiation toward soft and stiff tissue lineages via single-cell profiling

S Brielle, D Bavli, A Motzik, Y Kan-Tor… - Proceedings of the …, 2021 - National Acad Sciences
Mesenchymal stromal/stem cells (MSCs) form a heterogeneous population of multipotent
progenitors that contribute to tissue regeneration and homeostasis. MSCs assess …

[HTML][HTML] RNA degradation eliminates developmental transcripts during murine embryonic stem cell differentiation via CAPRIN1-XRN2

JO Viegas, GK Azad, Y Lv, L Fishman, T Paltiel… - Developmental Cell, 2022 - cell.com
Embryonic stem cells (ESCs) are self-renewing and pluripotent. In recent years, factors that
control pluripotency, mostly nuclear, have been identified. To identify non-nuclear regulators …

[HTML][HTML] Productive visualization of high-throughput sequencing data using the SeqCode open portable platform

E Blanco, M González-Ramírez, L Di Croce - Scientific Reports, 2021 - nature.com
Large-scale sequencing techniques to chart genomes are entirely consolidated. Stable
computational methods to perform primary tasks such as quality control, read mapping, peak …

[HTML][HTML] Assessing DNA sequence alignment methods for characterizing ancient genomes and methylomes

M Poullet, L Orlando - Frontiers in Ecology and Evolution, 2020 - frontiersin.org
Applying high-throughput DNA sequencing technologies to the ancient DNA molecules
preserved in subfossil material can provide genetic information from past individuals …

FRAGSITE2: A structure and fragment‐based approach for virtual ligand screening

H Zhou, J Skolnick - Protein Science, 2024 - Wiley Online Library
Protein function annotation and drug discovery often involve finding small molecule binders.
In the early stages of drug discovery, virtual ligand screening (VLS) is frequently applied to …

[HTML][HTML] Hypoxia induces DOT1L in articular cartilage to protect against osteoarthritis

A De Roover, AE Núñez, FMF Cornelis, C Cherifi… - JCI insight, 2021 - ncbi.nlm.nih.gov
Osteoarthritis is the most prevalent joint disease worldwide, and it is a leading source of pain
and disability. To date, this disease lacks curative treatment, as underlying molecular …

Molecular docking and structure-based drug design

S Agnihotry, RK Pathak, A Srivastav, PK Shukla… - Computer-aided drug …, 2020 - Springer
Computer-aided drug designing (CADD) relates to drug discovery, also characterized as a
cost-effective and active tool that manages or creates theoretical models that would be used …

[HTML][HTML] DNA damage signaling-induced cancer cell reprogramming as a driver of tumor relapse

D Filipponi, A Emelyanov, J Muller, C Molina, J Nichols… - Molecular cell, 2019 - cell.com
Accumulating evidence supports the role of the DNA damage response (DDR) in the
negative regulation of tumorigenesis. Here, we found that DDR signaling poises a series of …