Research progress and the application of near-infrared spectroscopy in protein structure and molecular interaction analysis

C Yu, D Liang, C Yang, B Zhao, Q Dong, A Wu… - Vibrational …, 2022 - Elsevier
Protein is the basis of life substance and the main undertaker of life activities. The study of
protein structure and the interaction between protein and other molecules is the basis of …

The Role of Force Fields and Water Models in Protein Folding and Unfolding Dynamics

ALM Fischer, A Tichy, J Kokot… - Journal of Chemical …, 2024 - ACS Publications
Protein folding is a fascinating, not fully understood phenomenon in biology. Molecular
dynamics (MD) simulations are an invaluable tool to study conformational changes in …

Emerging mutations in Nsp1 of SARS-CoV-2 and their effect on the structural stability

K Mou, F Mukhtar, MT Khan, DB Darwish, S Peng… - Pathogens, 2021 - mdpi.com
The genome of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) encodes 16
non-structural (Nsp) and 4 structural proteins. Among the Nsps, Nsp1 inhibits host gene …

Engineered Design of the E-Helix Structure on Ferritin Nanoparticles

Y Qu, K Davey, Y Sun, A Middelberg… - ACS Applied Bio …, 2022 - ACS Publications
Insertion of an immunogenic epitope at the C-terminus of ferritin has shown the potential to
produce a stable and efficacious vaccine. There is however limited understanding of how C …

Enzyme Inhibition-based assay to estimate the contribution of formulants to the effect of commercial pesticide formulations

EN Esimbekova, VP Kalyabina, KV Kopylova… - International Journal of …, 2023 - mdpi.com
Pesticides can affect the health of individual organisms and the function of the entire
ecosystem. Therefore, thorough assessment of the risks associated with the use of …

Relationship between changes in the protein folding pathway and the process of amyloid formation: The case of bovine carbonic anhydrase II

BS Melnik, NS Katina, NA Ryabova… - International Journal of …, 2022 - mdpi.com
Many proteins form amyloid fibrils only under conditions when the probability of transition
from a native (structured, densely packed) to an intermediate (labile, destabilized) state is …

COLOR: A compositional linear operation-based representation of protein sequences for identification of monomer contributions to properties

A Pandey, W Chen, S Keten - arXiv preprint arXiv:2501.06371, 2025 - arxiv.org
The properties of biological materials like proteins and nucleic acids are largely determined
by their primary sequence. While certain segments in the sequence strongly influence …

In Silico Screening of Sulfonamide Derivatives against Glycolytic Enzymes Reveals Mutation‐Independent Interactions of Sulfisoxazole and Sulfamethazine

J Dasgupta, A Malla, S Gupta, R Sur - ChemistrySelect, 2024 - Wiley Online Library
Glycolysis is a highly conserved biochemical process that involves the sequential
conversion of glucose to pyruvate and the generation of adenosine triphosphate (ATP) …

Effect of disease-linked mutations on the structure, function, stability and aggregation of human carbonic anhydrase II

P Gupta, P Mahlawat, S Deep - International journal of biological …, 2020 - Elsevier
Point mutations in gene sequence often lead to protein misfolding or destabilization which is
a well-known cause of a number of loss-of-function diseases. The carriers of point mutations …

Bacterial Luciferases from Vibrio harveyi and Photobacterium leiognathi Demonstrate Different Conformational Stability as Detected by Time-Resolved Fluorescence …

EV Nemtseva, DV Gulnov, MA Gerasimova… - International Journal of …, 2021 - mdpi.com
Detecting the folding/unfolding pathways of biological macromolecules is one of the urgent
problems of molecular biophysics. The unfolding of bacterial luciferase from Vibrio harveyi is …