Interactions with aromatic rings in chemical and biological recognition

EA Meyer, RK Castellano… - Angewandte Chemie …, 2003 - Wiley Online Library
Intermolecular interactions involving aromatic rings are key processes in both chemical and
biological recognition. Their understanding is essential for rational drug design and lead …

Aromatic-aromatic interaction: a mechanism of protein structure stabilization

SK Burley, GA Petsko - Science, 1985 - science.org
Analysis of neighboring aromatic groups in four biphenyl peptides or peptide analogs and
34 proteins reveals a specific aromatic-aromatic interaction. Aromatic pairs (< 7 Å between …

Proteins evolve on the edge of supramolecular self-assembly

H Garcia-Seisdedos, C Empereur-Mot, N Elad… - Nature, 2017 - nature.com
The self-association of proteins into symmetric complexes is ubiquitous in all kingdoms of
life,,,,,. Symmetric complexes possess unique geometric and functional properties, but their …

Structures of the tyrosine kinase domain of fibroblast growth factor receptor in complex with inhibitors

M Mohammadi, G McMahon, L Sun, C Tang, P Hirth… - Science, 1997 - science.org
A new class of protein tyrosine kinase inhibitors was identified that is based on an oxindole
core (indolinones). Two compounds from this class inhibited the kinase activity of fibroblast …

Amino‐aromatic interactions in proteins

SK Burley, GA Petsko - FEBS letters, 1986 - Wiley Online Library
Geometric analysis of 33 refined high‐resolution protein crystal structures (2 Å or higher)
demonstrates that side‐chain amino groups interact with aromatic side chains. Positively …

Molecular recognition of protein− ligand complexes: Applications to drug design

RE Babine, SL Bender - Chemical reviews, 1997 - ACS Publications
Advances in molecular biology have had a dramatic impact on the drug discovery process.
1, 2 The ability to produce recombinant proteins of biological significance has greatly …

Lone pair− aromatic interactions: To stabilize or not to stabilize

M Egli, S Sarkhel - Accounts of chemical research, 2007 - ACS Publications
The ability of aromatic rings to act as acceptors in hydrogen bonds has been demonstrated
extensively both by experimental and by theoretical means. Countless examples of D …

Weakly polar interactions in proteins

SK Burley, GA Petsko - Advances in protein chemistry, 1988 - Elsevier
Publisher Summary This chapter reviews the subject of noncovalent interactions in proteins
with particular emphasis on the so-called weakly polar interactions. The chapter discusses …

Domain association in immunoglobulin molecules: the packing of variable domains

C Chothia, J Novotný, R Bruccoleri… - Journal of molecular …, 1985 - Elsevier
We have analyzed the structure of the interface between VL and VH domains in three
immunoglobulin fragments: Fab KOL, Fab NEW and Fab MCPC 603. About 1800 Å 2 of …

The refined 1.9‐Å X‐ray crystal structure of d‐Phe‐Pro‐Arg chloromethylketone‐inhibited human α‐thrombin: Structure analysis, overall structure, electrostatic …

W Bode, D Turk, A Karshikov - Protein science, 1992 - Wiley Online Library
Thrombin is a multifunctional serine proteinase that plays a key role in coagulation while
exhibiting several other key cellular bioregulatory functions. The X-ray crystal structure of …