Which mouse multiparental population is right for your study? The Collaborative Cross inbred strains, their F1 hybrids, or the Diversity Outbred population

GR Keele - G3: Genes, Genomes, Genetics, 2023 - academic.oup.com
Multiparental populations (MPPs) encompass greater genetic diversity than traditional
experimental crosses of two inbred strains, enabling broader surveys of genetic variation …

Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation

GR Keele, BC Quach, JW Israel, GA Chappell… - PLoS …, 2020 - journals.plos.org
Gene transcription profiles across tissues are largely defined by the activity of regulatory
elements, most of which correspond to regions of accessible chromatin. Regulatory element …

Inference of putative cell-type-specific imprinted regulatory elements and genes during human neuronal differentiation

D Liang, N Aygün, N Matoba… - Human molecular …, 2023 - academic.oup.com
Genomic imprinting results in gene expression bias caused by parental chromosome of
origin and occurs in genes with important roles during human brain development. However …

A Bayesian model selection approach to mediation analysis

WL Crouse, GR Keele, MS Gastonguay… - PLoS …, 2022 - journals.plos.org
Genetic studies often seek to establish a causal chain of events originating from genetic
variation through to molecular and clinical phenotypes. When multiple phenotypes share a …

Bayesian modeling of skewed X inactivation in genetically diverse mice identifies a novel Xce allele associated with copy number changes

KY Sun, D Oreper, SA Schoenrock, R McMullan… - Genetics, 2021 - academic.oup.com
Female mammals are functional mosaics of their parental X-linked gene expression due to X
chromosome inactivation (XCI). This process inactivates one copy of the X chromosome in …

Genetic background influences the impact of KLOTHO deficiency

JS Salloum, DE Garsetti… - Physiological …, 2020 - journals.physiology.org
Genetic background is a key but sometimes overlooked factor that profoundly impacts
disease susceptibility and presentation in both humans and disease models. Here we show …

Genetics of Cell-Type-Specific Gene Regulation and Drug-Sensitive Cellular Phenotypes During Human Neurogenesis

N Aygün - 2023 - search.proquest.com
To interpret the function of genetic variants associated with neuropsychiatric disorders and
interindividual variation in other brain-relevant traits, expression quantitative trait loci (eQTL) …

Inference of cell-type specific imprinted regulatory elements and genes during human neuronal differentiation

D Liang, N Aygün, N Matoba, FY Ideraabdullah… - bioRxiv, 2021 - biorxiv.org
Genomic imprinting results in gene expression biased by parental chromosome of origin
and occurs in genes with important roles during human brain development. However, the …

Computational methods for studying parent-of-origin effects via reciprocal mouse crosses

D Oreper - 2018 - cdr.lib.unc.edu
Imprinted genes have been linked with diseases ranging from cancer, to metabolic
syndromes, to psychiatric illness. With regard to psychiatric illness in particular, numerous …

Skewed X inactivation in genetically diverse mice is associated with recurrent copy number changes at the Xce locus

KY Sun, D Oreper, SA Schoenrock, R McMullan… - bioRxiv, 2020 - biorxiv.org
Female mammals are functional mosaics of their parental X-linked gene expression due to X
chromosome inactivation (XCI). This process inactivates one copy of the X chromosome in …