Genome‐wide association and genomic selection in aquaculture

JM Yanez, A Barria, ME Lopez, T Moen… - Reviews in …, 2023 - Wiley Online Library
Recent advancements in genomic technologies have led to the discovery and application of
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare

P Suravajhala, LJA Kogelman… - Genetics Selection …, 2016 - Springer
In the past years, there has been a remarkable development of high-throughput omics (HTO)
technologies such as genomics, epigenomics, transcriptomics, proteomics and …

Genetic evaluation using single-step genomic best linear unbiased predictor in American Angus

DAL Lourenco, S Tsuruta, BO Fragomeni… - Journal of animal …, 2015 - academic.oup.com
Predictive ability of genomic EBV when using single-step genomic BLUP (ssGBLUP) in
Angus cattle was investigated. Over 6 million records were available on birth weight (BiW) …

Weighting strategies for single-step genomic BLUP: an iterative approach for accurate calculation of GEBV and GWAS

X Zhang, D Lourenco, I Aguilar, A Legarra… - Frontiers in …, 2016 - frontiersin.org
Genomic Best Linear Unbiased Predictor (GBLUP) assumes equal variance for all single
nucleotide polymorphisms (SNP). When traits are influenced by major SNP, Bayesian …

[HTML][HTML] Genome-wide association study on milk production and somatic cell score for Thai dairy cattle using weighted single-step approach with random regression …

S Buaban, K Lengnudum, W Boonkum… - Journal of Dairy …, 2022 - Elsevier
ABSTRACTS Genome-wide association studies are a powerful tool to identify genomic
regions and variants associated with phenotypes. However, only limited mutual confirmation …

Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle

I Aguilar, A Legarra, F Cardoso, Y Masuda… - Genetics Selection …, 2019 - Springer
Background Single-step genomic best linear unbiased prediction (SSGBLUP) is a
comprehensive method for genomic prediction. Point estimates of marker effects from …

Genomic Predictions and Genome-Wide Association Study of Resistance Against Piscirickettsia salmonis in Coho Salmon (Oncorhynchus kisutch) Using ddRAD …

A Barría, KA Christensen, GM Yoshida… - G3: Genes, genomes …, 2018 - academic.oup.com
Piscirickettsia salmonis is one of the main infectious diseases affecting coho salmon
(Oncorhynchus kisutch) farming, and current treatments have been ineffective for the control …

Genome-Wide Association Study for Identifying Loci that Affect Fillet Yield, Carcass, and Body Weight Traits in Rainbow Trout (Oncorhynchus mykiss)

D Gonzalez-Pena, G Gao, M Baranski, T Moen… - Frontiers in …, 2016 - frontiersin.org
Fillet yield (FY,%) is an economically-important trait in rainbow trout aquaculture that affects
production efficiency. Despite that, FY has received little attention in breeding programs …

Comprehensive transcriptome and methylome analysis delineates the biological basis of hair follicle development and wool-related traits in Merino sheep

B Zhao, H Luo, J He, X Huang, S Chen, X Fu, W Zeng… - BMC biology, 2021 - Springer
Background Characterization of the molecular mechanisms underlying hair follicle
development is of paramount importance in the genetic improvement of wool-related traits in …

Genomic Selection for Growth Traits in Pacific Oyster (Crassostrea gigas): Potential of Low-Density Marker Panels for Breeding Value Prediction

AP Gutierrez, O Matika, TP Bean, RD Houston - Frontiers in Genetics, 2018 - frontiersin.org
Pacific oysters are a key aquaculture species globally, and genetic improvement via
selective breeding is a major target. Genomic selection has the potential to expedite genetic …