Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations

P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He… - Cell, 2021 - cell.com
Structural variations (SVs) and gene copy number variations (gCNVs) have contributed to
crop evolution, domestication, and improvement. Here, we assembled 31 high-quality …

Integrating omics databases for enhanced crop breeding

H Chao, S Zhang, Y Hu, Q Ni, S Xin, L Zhao… - Journal of Integrative …, 2024 - degruyter.com
Crop plant breeding involves selecting and developing new plant varieties with desirable
traits such as increased yield, improved disease resistance, and enhanced nutritional value …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

Database resources of the national genomics data center, China national center for bioinformation in 2023

Nucleic acids research, 2023 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global academic …

Twenty years of rice genomics research: From sequencing and functional genomics to quantitative genomics

C Wang, B Han - Molecular Plant, 2022 - cell.com
Since the completion of the rice genome sequencing project in 2005, we have entered the
era of rice genomics, which is still in its ascendancy. Rice genomics studies can be …

Base-editing-mediated artificial evolution of OsALS1 in planta to develop novel herbicide-tolerant rice germplasms

Y Kuang, S Li, B Ren, F Yan, C Spetz, X Li, X Zhou… - Molecular plant, 2020 - cell.com
Recently developed CRISPR-mediated base editors, which enable the generation of
numerous nucleotide changes in target genomic regions, have been widely adopted for …

A compressed variance component mixed model for detecting QTNs and QTN-by-environment and QTN-by-QTN interactions in genome-wide association studies

M Li, YW Zhang, ZC Zhang, Y Xiang, MH Liu, YH Zhou… - Molecular Plant, 2022 - cell.com
Although genome-wide association studies are widely used to mine genes for quantitative
traits, the effects to be estimated are confounded, and the methodologies for detecting …

Database resources of the national genomics data center in 2020

Nucleic acids research, 2020 - academic.oup.com
Abstract The National Genomics Data Center (NGDC) provides a suite of database
resources to support worldwide research activities in both academia and industry. With the …

[HTML][HTML] BnTIR: an online transcriptome platform for exploring RNA‐seq libraries for oil crop Brassica napus

D Liu, L Yu, L Wei, P Yu, J Wang, H Zhao… - Plant Biotechnology …, 2021 - ncbi.nlm.nih.gov
accepted 11 July 2021.* Correspondence:(Tel+ 86-2787286881; fax+ 86-2787286885;
email lusp@ mail. hzau. edu. cn (SL); Tel+ 86-13871209417; email cdai@ mail. hzau. edu …

Widespread position-dependent transcriptional regulatory sequences in plants

Y Voichek, G Hristova, A Mollá-Morales, D Weigel… - Nature Genetics, 2024 - nature.com
Much of what we know about eukaryotic transcription stems from animals and yeast;
however, plants evolved separately for over a billion years, leaving ample time for …