A General Model for Biofilm-Driven Microbial Electrosynthesis of Carboxylates From CO2
O Cabau-Peinado, AJJ Straathof… - Frontiers in Microbiology, 2021 - frontiersin.org
Up to now, computational modeling of microbial electrosynthesis (MES) has been
underexplored, but is necessary to achieve breakthrough understanding of the process …
underexplored, but is necessary to achieve breakthrough understanding of the process …
Automatic design of gene regulatory mechanisms for spatial pattern formation
Gene regulatory mechanisms (GRMs) control the formation of spatial and temporal
expression patterns that can serve as regulatory signals for the development of complex …
expression patterns that can serve as regulatory signals for the development of complex …
Microbe Profile: Cellvibrio japonicus: living the sweet life via biomass break-down
JG Gardner - Microbiology, 2024 - microbiologyresearch.org
Cellvibrio japonicus is a saprophytic bacterium proficient at environmental polysaccharide
degradation for carbon and energy acquisition. Genetic, enzymatic, and structural …
degradation for carbon and energy acquisition. Genetic, enzymatic, and structural …
Inference of dynamic spatial GRN models with multi-GPU evolutionary computation
Reverse engineering mechanistic gene regulatory network (GRN) models with a specific
dynamic spatial behavior is an inverse problem without analytical solutions in general …
dynamic spatial behavior is an inverse problem without analytical solutions in general …
mergem: merging, comparing, and translating genome-scale metabolic models using universal identifiers
Numerous methods exist to produce and refine genome-scale metabolic models. However,
due to the use of incompatible identifier systems for metabolites and reactions, computing …
due to the use of incompatible identifier systems for metabolites and reactions, computing …
mergem: merging and comparing genome-scale metabolic models using universal identifiers
Numerous methods exist to produce and refine genome-scale metabolic models. However,
due to the use of incompatible identifier systems for metabolites and reactions, computing …
due to the use of incompatible identifier systems for metabolites and reactions, computing …
Automatic generation of interactive multidimensional phase portraits
OO Ogunsan, D Lobo - bioRxiv, 2022 - biorxiv.org
Mathematical models formally and precisely represent biological mechanisms with complex
dynamics. To understand the possible behaviors of such systems, phase portrait diagrams …
dynamics. To understand the possible behaviors of such systems, phase portrait diagrams …
Novel Systems Biology Methods for the Analysis, Optimization, and Visualization of Kinetic and Genome-Scale Stoichiometric Models
A Hari - 2022 - search.proquest.com
Genetic and metabolic engineering has made it possible to use microbial organisms as
systems that can be engineered for various applications such as bio-product generation and …
systems that can be engineered for various applications such as bio-product generation and …