The role of naive T cell precursor frequency and recruitment in dictating immune response magnitude

MK Jenkins, JJ Moon - The Journal of Immunology, 2012 - journals.aai.org
Recent advances in technology have led to the realization that the populations of naive T
cells specific for different foreign peptide: MHC (p: MHC) ligands vary in size. This variability …

Flow‐cytometric analysis of rare antigen‐specific T cells

P Bacher, A Scheffold - Cytometry Part A, 2013 - Wiley Online Library
The cytometric enumeration and characterization of antigen‐specific lymphocytes, as
introduced about 15 years ago, has contributed significantly to our understanding of …

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

M Shugay, DV Bagaev, IV Zvyagin… - Nucleic acids …, 2018 - academic.oup.com
The ability to decode antigen specificities encapsulated in the sequences of rearranged T-
cell receptor (TCR) genes is critical for our understanding of the adaptive immune system …

Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire

RO Emerson, WS DeWitt, M Vignali, J Gravley, JK Hu… - Nature …, 2017 - nature.com
An individual's T cell repertoire dynamically encodes their pathogen exposure history. To
determine whether pathogen exposure signatures can be identified by documenting public T …

Properties of MHC class I presented peptides that enhance immunogenicity

JJA Calis, M Maybeno, JA Greenbaum… - PLoS computational …, 2013 - journals.plos.org
T-cells have to recognize peptides presented on MHC molecules to be activated and elicit
their effector functions. Several studies demonstrate that some peptides are more …

Clonal deletion prunes but does not eliminate self-specific αβ CD8+ T lymphocytes

W Yu, N Jiang, PJR Ebert, BA Kidd, S Müller, PJ Lund… - Immunity, 2015 - cell.com
It has long been thought that clonal deletion efficiently removes almost all self-specific T
cells from the peripheral repertoire. We found that self-peptide MHC-specific CD8+ T cells in …

Detection of enriched T cell epitope specificity in full T cell receptor sequence repertoires

S Gielis, P Moris, W Bittremieux, N De Neuter… - Frontiers in …, 2019 - frontiersin.org
High-throughput T cell receptor (TCR) sequencing allows the characterization of an
individual's TCR repertoire and directly queries their immune state. However, it remains a …

Recruitment of epitope-specific T cell clones with a low-avidity threshold supports efficacy against mutational escape upon re-infection

A Straub, S Grassmann, S Jarosch, L Richter… - Immunity, 2023 - cell.com
Repetitive pathogen exposure leads to the dominant outgrowth of T cell clones with high T
cell receptor (TCR) affinity to the relevant pathogen-associated antigens. However, low …

Splicing Patterns in SF3B1-Mutated Uveal Melanoma Generate Shared Immunogenic Tumor-Specific Neoepitopes

J Bigot, AI Lalanne, F Lucibello, P Gueguen, A Houy… - Cancer discovery, 2021 - AACR
Disruption of splicing patterns due to mutations of genes coding splicing factors in tumors
represents a potential source of tumor neoantigens, which would be both public (shared …

Mucosal-associated invariant T cell–rich congenic mouse strain allows functional evaluation

Y Cui, K Franciszkiewicz, YK Mburu… - The Journal of …, 2015 - Am Soc Clin Investig
Mucosal-associated invariant T cells (MAITs) have potent antimicrobial activity and are
abundant in humans (5%–10% in blood). Despite strong evolutionary conservation of the …