Automated segmentation of tissues using CT and MRI: a systematic review

L Lenchik, L Heacock, AA Weaver, RD Boutin… - Academic radiology, 2019 - Elsevier
Rationale and Objectives The automated segmentation of organs and tissues throughout the
body using computed tomography and magnetic resonance imaging has been rapidly …

Towards a mechanistic understanding of the human subcortex

BU Forstmann, G de Hollander, L van Maanen… - Nature Reviews …, 2017 - nature.com
The human subcortex is a densely populated part of the brain, of which only 7% of the
individual structures are depicted in standard MRI atlases. In vivo MRI of the subcortex is …

International multicenter analysis of brain structure across clinical stages of Parkinson's disease

MA Laansma, JK Bright, S Al‐Bachari… - Movement …, 2021 - Wiley Online Library
Background Brain structure abnormalities throughout the course of Parkinson's disease
have yet to be fully elucidated. Objective Using a multicenter approach and harmonized …

[HTML][HTML] Optimization and comparative evaluation of nonlinear deformation algorithms for atlas-based segmentation of DBS target nuclei

S Ewert, A Horn, F Finkel, N Li, AA Kühn… - Neuroimage, 2019 - Elsevier
Nonlinear registration of individual brain MRI scans to standard brain templates is common
practice in neuroimaging and multiple registration algorithms have been developed and …

[HTML][HTML] The Amsterdam Ultra-high field adult lifespan database (AHEAD): A freely available multimodal 7 Tesla submillimeter magnetic resonance imaging database

A Alkemade, MJ Mulder, JM Groot, BR Isaacs… - NeuroImage, 2020 - Elsevier
Normative databases allow testing of novel hypotheses without the costly collection of
magnetic resonance imaging (MRI) data. Here we present the Amsterdam Ultra-high field …

Effects of aging on , , and QSM MRI values in the subcortex

MC Keuken, PL Bazin, K Backhouse… - Brain Structure and …, 2017 - Springer
The aging brain undergoes several anatomical changes that can be measured with
Magnetic Resonance Imaging (MRI). Early studies using lower field strengths have …

Fast and robust segmentation of the striatum using deep convolutional neural networks

H Choi, KH Jin - Journal of neuroscience methods, 2016 - Elsevier
Background Automated segmentation of brain structures is an important task in structural
and functional image analysis. We developed a fast and accurate method for the striatum …

Brain/MINDS beyond human brain MRI project: A protocol for multi-level harmonization across brain disorders throughout the lifespan

S Koike, SC Tanaka, T Okada, T Aso, A Yamashita… - NeuroImage: Clinical, 2021 - Elsevier
Psychiatric and neurological disorders are afflictions of the brain that can affect individuals
throughout their lifespan. Many brain magnetic resonance imaging (MRI) studies have been …

Multisite test–retest reliability and compatibility of brain metrics derived from FreeSurfer versions 7.1, 6.0, and 5.3

E Haddad, F Pizzagalli, AH Zhu, RR Bhatt… - Human Brain …, 2023 - Wiley Online Library
Automatic neuroimaging processing tools provide convenient and systematic methods for
extracting features from brain magnetic resonance imaging scans. One tool, FreeSurfer …

A probabilistic template of human mesopontine tegmental nuclei from in vivo 7 T MRI

M Bianciardi, C Strong, N Toschi, BL Edlow, B Fischl… - Neuroimage, 2018 - Elsevier
Mesopontine tegmental nuclei such as the cuneiform, pedunculotegmental, oral pontine
reticular, paramedian raphe and caudal linear raphe nuclei, are deep brain structures …