Mapping the genomic diaspora of gastric cancer

KG Yeoh, P Tan - Nature reviews cancer, 2022 - nature.com
Gastric cancer (GC) is a leading contributor to global cancer incidence and mortality.
Pioneering genomic studies, focusing largely on primary GCs, revealed driver alterations in …

Data‐independent acquisition mass spectrometry‐based proteomics and software tools: a glimpse in 2020

F Zhang, W Ge, G Ruan, X Cai, T Guo - Proteomics, 2020 - Wiley Online Library
This review provides a brief overview of the development of data‐independent acquisition
(DIA) mass spectrometry‐based proteomics and selected DIA data analysis tools. Various …

Integrative proteomic characterization of human lung adenocarcinoma

JY Xu, C Zhang, X Wang, L Zhai, Y Ma, Y Mao, K Qian… - Cell, 2020 - cell.com
Genomic studies of lung adenocarcinoma (LUAD) have advanced our understanding of the
disease's biology and accelerated targeted therapy. However, the proteomic characteristics …

iProX: an integrated proteome resource

J Ma, T Chen, S Wu, C Yang, M Bai, K Shu… - Nucleic acids …, 2019 - academic.oup.com
Sharing of research data in public repositories has become best practice in academia. With
the accumulation of massive data, network bandwidth and storage requirements are rapidly …

POSREG: proteomic signature discovered by simultaneously optimizing its reproducibility and generalizability

F Li, Y Zhou, Y Zhang, J Yin, Y Qiu… - Briefings in …, 2022 - academic.oup.com
Mass spectrometry-based proteomic technique has become indispensable in current
exploration of complex and dynamic biological processes. Instrument development has …

Reduced m6A modification predicts malignant phenotypes and augmented Wnt/PI3K‐Akt signaling in gastric cancer

C Zhang, M Zhang, S Ge, W Huang, X Lin… - Cancer …, 2019 - Wiley Online Library
Background As the most abundant epigenetic modification on mRNAs and long non‐coding
RNAs, N6‐methyladenosine (m6A) modification extensively exists in mammalian cells …

Reprogramming of palmitic acid induced by dephosphorylation of ACOX1 promotes β-catenin palmitoylation to drive colorectal cancer progression

Q Zhang, X Yang, J Wu, S Ye, J Gong, WM Cheng… - Cell discovery, 2023 - nature.com
Metabolic reprogramming is a hallmark of cancer. However, it is not well known how
metabolism affects cancer progression. We identified that metabolic enzyme acyl-CoA …

Large-scale and high-resolution mass spectrometry-based proteomics profiling defines molecular subtypes of esophageal cancer for therapeutic targeting

W Liu, L Xie, YH He, ZY Wu, LX Liu, XF Bai… - Nature …, 2021 - nature.com
Esophageal cancer (EC) is a type of aggressive cancer without clinically relevant molecular
subtypes, hindering the development of effective strategies for treatment. To define …

Proteomic characterization of gastric cancer response to chemotherapy and targeted therapy reveals potential therapeutic strategies

Y Li, C Xu, B Wang, F Xu, F Ma, Y Qu, D Jiang… - Nature …, 2022 - nature.com
Chemotherapy and targeted therapy are the major treatments for gastric cancer (GC), but
drug resistance limits its effectiveness. Here, we profile the proteome of 206 tumor tissues …

Integrated proteogenomic characterization of urothelial carcinoma of the bladder

N Xu, Z Yao, G Shang, D Ye, H Wang, H Zhang… - Journal of hematology & …, 2022 - Springer
Background Urothelial carcinoma (UC) is the most common pathological type of bladder
cancer, a malignant tumor. However, an integrated multi-omics analysis of the Chinese UC …