DNA functional materials assembled from branched DNA: design, synthesis, and applications

Y Dong, C Yao, Y Zhu, L Yang, D Luo… - Chemical Reviews, 2020 - ACS Publications
DNA is traditionally known as a central genetic biomolecule in living systems. From an
alternative perspective, DNA is a versatile molecular building-block for the construction of …

2-aminopurine as a fluorescent probe of DNA conformation and the DNA–enzyme interface

AC Jones, RK Neely - Quarterly reviews of biophysics, 2015 - cambridge.org
Nearly 50 years since its potential as a fluorescent base analogue was first recognized, 2-
aminopurine (2AP) continues to be the most widely used fluorescent probe of DNA structure …

Advances in quantitative FRET‐based methods for studying nucleic acids

S Preus, LM Wilhelmsson - ChemBioChem, 2012 - Wiley Online Library
Förster resonance energy transfer (FRET) is a powerful tool for monitoring molecular
distances and interactions at the nanoscale level. The strong dependence of transfer …

Integration of logic gates to CRISPR/Cas12a system for rapid and sensitive detection of pathogenic bacterial genes

L Peng, J Zhou, L Yin, S Man, L Ma - Analytica Chimica Acta, 2020 - Elsevier
For the first time, three 2-input elementary AND, OR, INHIBIT logic gates have been
constructed by using CRISPR-Cas12a system. These logic gates utilised the intrinsic …

DNA-Mediated Peptide Assembly into Protein Mimics

F Zhao, M Frandsen, S Capodaglio… - Journal of the American …, 2024 - ACS Publications
The design of new protein structures is challenging due to their vast sequence space and
the complexity of protein folding. Here, we report a new modular DNA-templated strategy to …

A single CAA interrupt in a DNA three-way junction containing a CAG repeat hairpin results in parity-dependent trapping

GM Cadden, SJ Wilken… - Nucleic Acids Research, 2024 - academic.oup.com
An increasing number of human disorders are attributed to genomic expansions of short
tandem repeats (STRs). Secondary DNA structures formed by STRs are believed to play an …

A guide to small fluorescent probes for single-molecule biophysics

MC Leake, SD Quinn - Chemical Physics Reviews, 2023 - pubs.aip.org
The explosive growth of single-molecule techniques is transforming our understanding of
biology, helping to develop new physics inspired by emergent biological processes, and …

FeII4L4 Tetrahedron Binds to Nonpaired DNA Bases

J Zhu, CJE Haynes, M Kieffer… - Journal of the …, 2019 - ACS Publications
A water-soluble self-assembled supramolecular FeII4L4 tetrahedron binds to single
stranded DNA, mismatched DNA base pairs, and three-way DNA junctions. Binding of the …

Nucleic acid fluorescent probes for biological sensing

X Su, X Xiao, C Zhang, M Zhao - Applied spectroscopy, 2012 - journals.sagepub.com
Nucleic acid fluorescent probes are playing increasingly important roles in biological
sensing in recent years. In addition to the conventional functions of single-stranded …

Conformational and migrational dynamics of slipped-strand DNA three-way junctions containing trinucleotide repeats

T Hu, MJ Morten, SW Magennis - Nature communications, 2021 - nature.com
Expansions of CAG/CTG trinucleotide repeats in DNA are the cause of at least 17
degenerative human disorders, including Huntington's Disease. Repeat instability is thought …