Do we underestimate the importance of water in cell biology?

M Chaplin - Nature Reviews Molecular Cell Biology, 2006 - nature.com
Liquid water is a highly versatile material. Although it is formed from the tiniest of molecules,
it can shape and control biomolecules. The hydrogen-bonding properties of water are …

Biomolecular electrostatics and solvation: a computational perspective

P Ren, J Chun, DG Thomas, MJ Schnieders… - Quarterly reviews of …, 2012 - cambridge.org
An understanding of molecular interactions is essential for insight into biological systems at
the molecular scale. Among the various components of molecular interactions, electrostatics …

Introducing DDEC6 atomic population analysis: part 2. Computed results for a wide range of periodic and nonperiodic materials

NG Limas, TA Manz - RSC advances, 2016 - pubs.rsc.org
Net atomic charges (NACs) are widely used throughout the chemical sciences to concisely
summarize key information about charge transfer between atoms in materials. The vast …

Introducing DDEC6 atomic population analysis: part 4. Efficient parallel computation of net atomic charges, atomic spin moments, bond orders, and more

NG Limas, TA Manz - RSC advances, 2018 - pubs.rsc.org
The DDEC6 method is one of the most accurate and broadly applicable atomic population
analysis methods. It works for a broad range of periodic and non-periodic materials with no …

Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions

D Miyoshi, H Karimata, N Sugimoto - Journal of the American …, 2006 - ACS Publications
The effect of molecular crowding on the structure and stability of biomolecules has become a
subject of increasing interest because it can clarify how biomolecules behave under cell …

Interpreting protein/DNA interactions: distinguishing specific from non-specific and electrostatic from non-electrostatic components

PL Privalov, AI Dragan… - Nucleic acids …, 2011 - academic.oup.com
We discuss the effectiveness of existing methods for understanding the forces driving the
formation of specific protein–DNA complexes. Theoretical approaches using the Poisson …

Groove binding mechanism of ionic liquids: a key factor in long-term stability of DNA in hydrated ionic liquids?

A Chandran, D Ghoshdastidar… - Journal of the American …, 2012 - ACS Publications
Nucleic acid sample storage is of paramount importance in biotechnology and forensic
sciences. Very recently, hydrated ionic liquids (ILs) have been identified as ideal media for …

[图书][B] Molecular Theory of Water and Aqueous Solutions-Part 1: Understanding Water

A Ben-Naim - 2009 - books.google.com
The aim of this book is to explain the unusual properties of both pure liquid water and simple
aqueous solutions, in terms of the properties of single molecules and interactions among …

Microcalorimetry of biological macromolecules

PL Privalov, AI Dragan - Biophysical chemistry, 2007 - Elsevier
The capabilities of contemporary differential scanning and isothermal titration
microcalorimetry for studying the thermodynamics of protein unfolding/refolding and their …

What drives proteins into the major or minor grooves of DNA?

PL Privalov, AI Dragan, C Crane-Robinson… - Journal of molecular …, 2007 - Elsevier
The energetic profiles of a significant number of protein–DNA systems at 20° C reveal that,
despite comparable Gibbs free energies, association with the major groove is primarily an …