Cell-type deconvolution from DNA methylation: a review of recent applications

AJ Titus, RM Gallimore, LA Salas… - Human molecular …, 2017 - academic.oup.com
Recent advances in cell-type deconvolution approaches are adding to our understanding of
the biology underlying disease development and progression. DNA methylation (DNAm) …

An immunological perspective on neonatal sepsis

B Kan, HR Razzaghian, PM Lavoie - Trends in molecular medicine, 2016 - cell.com
Despite concerted international efforts, mortality from neonatal infections remains
unacceptably high in some areas of the world, particularly for premature infants. Recent …

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

LA Salas, DC Koestler, RA Butler, HM Hansen… - Genome biology, 2018 - Springer
Genome-wide methylation arrays are powerful tools for assessing cell composition of
complex mixtures. We compare three approaches to select reference libraries for …

Caloric restriction delays age-related methylation drift

S Maegawa, Y Lu, T Tahara, JT Lee, J Madzo… - Nature …, 2017 - nature.com
In mammals, caloric restriction consistently results in extended lifespan. Epigenetic
information encoded by DNA methylation is tightly regulated, but shows a striking drift …

Meffil: efficient normalization and analysis of very large DNA methylation datasets

JL Min, G Hemani, G Davey Smith, C Relton… - …, 2018 - academic.oup.com
Motivation DNA methylation datasets are growing ever larger both in sample size and
genome coverage. Novel computational solutions are required to efficiently handle these …

DNA methylation of cord blood cell types: applications for mixed cell birth studies

KM Bakulski, JI Feinberg, SV Andrews, J Yang… - Epigenetics, 2016 - Taylor & Francis
Epigenome-wide association studies of disease widely use DNA methylation measured in
blood as a surrogate tissue. Cell proportions can vary between people and confound …

An epigenetic clock for gestational age at birth based on blood methylation data

AK Knight, JM Craig, C Theda, M Bækvad-Hansen… - Genome biology, 2016 - Springer
Background Gestational age is often used as a proxy for developmental maturity by
clinicians and researchers alike. DNA methylation has previously been shown to be …

methylclock: a Bioconductor package to estimate DNA methylation age

D Pelegí-Sisó, P De Prado, J Ronkainen… - …, 2021 - academic.oup.com
Motivation Ageing is a biological and psychosocial process related to diseases and
mortality. It correlates with changes in DNA methylation (DNAm) in all human tissues …

Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: findings from the pregnancy and childhood epigenetics (PACE) consortium

GC Sharp, LA Salas, C Monnereau… - Human molecular …, 2017 - academic.oup.com
Pre-pregnancy maternal obesity is associated with adverse offspring outcomes at birth and
later in life. Individual studies have shown that epigenetic modifications such as DNA …

Cell-specific characterization of the placental methylome

V Yuan, D Hui, Y Yin, MS Peñaherrera, AG Beristain… - BMC genomics, 2021 - Springer
Background DNA methylation (DNAm) profiling has emerged as a powerful tool for
characterizing the placental methylome. However, previous studies have focused primarily …