Bayesian computing with INLA: a review

H Rue, A Riebler, SH Sørbye, JB Illian… - Annual Review of …, 2017 - annualreviews.org
The key operation in Bayesian inference is to compute high-dimensional integrals. An old
approximate technique is the Laplace method or approximation, which dates back to Pierre …

Unifying spatial and social network analysis in disease ecology

GF Albery, L Kirkpatrick, JA Firth… - Journal of Animal …, 2021 - Wiley Online Library
Social network analysis has achieved remarkable popularity in disease ecology, and is
sometimes carried out without investigating spatial heterogeneity. Many investigations into …

Bayesian computing with INLA: new features

TG Martins, D Simpson, F Lindgren, H Rue - Computational Statistics & …, 2013 - Elsevier
The INLA approach for approximate Bayesian inference for latent Gaussian models has
been shown to give fast and accurate estimates of posterior marginals and also to be a …

Genetic architecture and lifetime dynamics of inbreeding depression in a wild mammal

MA Stoffel, SE Johnston, JG Pilkington… - Nature …, 2021 - nature.com
Inbreeding depression is ubiquitous, but we still know little about its genetic architecture and
precise effects in wild populations. Here, we combine long-term life-history data with 417 K …

Comparing parent–offspring regression with frequentist and Bayesian animal models to estimate heritability in wild populations: a simulation study for Gaussian and …

P de Villemereuil, O Gimenez… - Methods in Ecology and …, 2013 - Wiley Online Library
Estimating heritability of traits in wild populations is a major prerequisite to understand their
evolution. Until recently, most heritability estimates had been obtained using parent …

Applying Bayesian spatiotemporal models to fisheries bycatch in the Canadian Arctic

A Cosandey-Godin, ET Krainski, B Worm… - Canadian Journal of …, 2015 - cdnsciencepub.com
Understanding and reducing the incidence of accidental bycatch, particularly for vulnerable
species such as sharks, is a major challenge for contemporary fisheries management. Here …

Integrated nested Laplace approximations (INLA)

S Martino, A Riebler - arXiv preprint arXiv:1907.01248, 2019 - arxiv.org
This is a short description and basic introduction to the Integrated nested Laplace
approximations (INLA) approach. INLA is a deterministic paradigm for Bayesian inference in …

Genetic fine‐mapping and identification of candidate genes and variants for adiposity traits in outbred rats

GR Keele, JW Prokop, H He, K Holl, J Littrell, A Deal… - …, 2018 - Wiley Online Library
Objective Obesity is a major risk factor for multiple diseases and is in part heritable, yet the
majority of causative genetic variants that drive excessive adiposity remain unknown. Here …

Multiple spatial behaviours govern social network positions in a wild ungulate

GF Albery, A Morris, S Morris, JM Pemberton… - Ecology …, 2021 - Wiley Online Library
The structure of wild animal social systems depends on a complex combination of intrinsic
and extrinsic drivers. Population structuring and spatial behaviour are key determinants of …

Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies

S Sun, J Zhu, S Mozaffari, C Ober, M Chen… - …, 2019 - academic.oup.com
Motivation Genomic sequencing studies, including RNA sequencing and bisulfite
sequencing studies, are becoming increasingly common and increasingly large. Large …