Efficient access to information contained in online scientific literature collections is essential
for life science research, playing a crucial role from the initial stage of experiment planning …

The Handbook of Natural Language Processing, Second Edition presents practical tools
and techniques for implementing natural language processing in computer systems. Along …

Background: The biomedical literature is the primary information source for manual protein-
protein interaction annotations. Text-mining systems have been implemented to extract …

The most important way of conveying new findings in biomedical research is scientific
publication. Extraction of protein–protein interactions (PPIs) reported in scientific …

This article surveys efforts on text mining of the pharmacogenomics literature, mainly from
the period 2008 to 2011. Pharmacogenomics (or pharmacogenetics) is the field that studies …

Abstract Background We report the Gene Normalization (GN) challenge in BioCreative III
where participating teams were asked to return a ranked list of identifiers of the genes …

Motivation: The recognition and normalization of textual mentions of gene and protein
names is both particularly important and challenging. Its importance lies in the fact that they …

Motivation: Text mining in the biomedical domain aims at helping researchers to access
information contained in scientific publications in a faster, easier and more complete way …

Background To access and utilize the rich information contained in the biomedical literature,
the ability to recognize and normalize gene mentions referenced in the literature is crucial. In …

We advance the state of the art in biomolecular interaction extraction with three
contributions:(i) We show that deep, Abstract Meaning Representations (AMR) significantly …