Reprogramming the genetic code

D de la Torre, JW Chin - Nature Reviews Genetics, 2021 - nature.com
The encoded biosynthesis of proteins provides the ultimate paradigm for high-fidelity
synthesis of long polymers of defined sequence and composition, but it is limited to …

Cracking the code: reprogramming the genetic script in prokaryotes and eukaryotes to harness the power of noncanonical amino acids

C Jann, S Giofré, R Bhattacharjee, EA Lemke - Chemical Reviews, 2024 - ACS Publications
Over 500 natural and synthetic amino acids have been genetically encoded in the last two
decades. Incorporating these noncanonical amino acids into proteins enables many …

Genetic code expansion: a brief history and perspective

MA Shandell, Z Tan, VW Cornish - Biochemistry, 2021 - ACS Publications
Since the establishment of site-specific mutagenesis of single amino acids to interrogate
protein function in the 1970s, biochemists have sought to tailor protein structure in the native …

Root of the tree: the significance, evolution, and origins of the ribosome

JC Bowman, AS Petrov, M Frenkel-Pinter… - Chemical …, 2020 - ACS Publications
The ribosome is an ancient molecular fossil that provides a telescope to the origins of life.
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …

Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro

J Lee, KJ Schwarz, DS Kim, JS Moore… - Nature …, 2020 - nature.com
Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is
challenging due to their poor compatibility with the translation apparatus, which evolved to …

Expanding the limits of the second genetic code with ribozymes

J Lee, KE Schwieter, AM Watkins, DS Kim, H Yu… - Nature …, 2019 - nature.com
The site-specific incorporation of noncanonical monomers into polypeptides through genetic
code reprogramming permits synthesis of bio-based products that extend beyond natural …

A call for caution in analysing mammalian co-transfection experiments and implications of resource competition in data misinterpretation

R Di Blasi, MM Marbiah, V Siciliano, K Polizzi… - Nature …, 2021 - nature.com
Transient transfections are routinely used in basic and synthetic biology studies to unravel
pathway regulation and to probe and characterise circuit designs. As each experiment has a …

In vitro ribosome synthesis and evolution through ribosome display

MJ Hammerling, BR Fritz, DJ Yoesep, DS Kim… - Nature …, 2020 - nature.com
Directed evolution of the ribosome for expanded substrate incorporation and novel functions
is challenging because the requirement of cell viability limits the mutations that can be …

Understanding resource competition to achieve predictable synthetic gene expression in eukaryotes

R Di Blasi, J Gabrielli, K Shabestary, I Ziarti… - Nature Reviews …, 2024 - nature.com
Synthetic gene expression in engineered cells typically depends on the host cell's limited
pool of intracellular resources, which can lead to resource competition between native and …

Synthetic biological circuits within an orthogonal central dogma

A Costello, AH Badran - Trends in biotechnology, 2021 - cell.com
Synthetic biology strives to reliably control cellular behavior, typically in the form of user-
designed interactions of biological components to produce a predetermined output …