Endogenous retroviruses in the origins and treatment of cancer

N Jansz, GJ Faulkner - Genome biology, 2021 - Springer
Endogenous retroviruses (ERVs) are emerging as promising therapeutic targets in cancer.
As remnants of ancient retroviral infections, ERV-derived regulatory elements coordinate …

Transposable elements, inflammation, and neurological disease

A Saleh, A Macia, AR Muotri - Frontiers in neurology, 2019 - frontiersin.org
Transposable Elements (TE) are mobile DNA elements that can replicate and insert
themselves into different locations within the host genome. Their propensity to self …

[HTML][HTML] Transient naive reprogramming corrects hiPS cells functionally and epigenetically

S Buckberry, X Liu, D Poppe, JP Tan, G Sun, J Chen… - Nature, 2023 - nature.com
Cells undergo a major epigenome reconfiguration when reprogrammed to human induced
pluripotent stem cells (hiPS cells). However, the epigenomes of hiPS cells and human …

Nanopore sequencing enables comprehensive transposable element epigenomic profiling

AD Ewing, N Smits, FJ Sanchez-Luque, J Faivre… - Molecular Cell, 2020 - cell.com
Transposable elements (TEs) drive genome evolution and are a notable source of
pathogenesis, including cancer. While CpG methylation regulates TE activity, the locus …

[HTML][HTML] Resolution of structural variation in diverse mouse genomes reveals chromatin remodeling due to transposable elements

A Ferraj, PA Audano, P Balachandran, A Czechanski… - Cell Genomics, 2023 - cell.com
Diverse inbred mouse strains are important biomedical research models, yet genome
characterization of many strains is fundamentally lacking in comparison with humans. In …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development

P Gerdes, D Chan, M Lundberg… - Genome …, 2023 - genome.cshlp.org
Mice harbor∼ 2800 intact copies of the retrotransposon Long Interspersed Element 1 (L1).
The in vivo retrotransposition capacity of an L1 copy is defined by both its sequence integrity …

LINE-1 retrotransposons contribute to mouse PV interneuron development

GO Bodea, JM Botto, ME Ferreiro… - Nature …, 2024 - nature.com
Retrotransposons are mobile DNA sequences duplicated via transcription and reverse
transcription of an RNA intermediate. Cis-regulatory elements encoded by retrotransposons …

LINE-1 evasion of epigenetic repression in humans

FJ Sanchez-Luque, MJHC Kempen, P Gerdes… - Molecular cell, 2019 - cell.com
Epigenetic silencing defends against LINE-1 (L1) retrotransposition in mammalian cells.
However, the mechanisms that repress young L1 families and how L1 escapes to cause …

[HTML][HTML] Locus-level L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites

S Lanciano, C Philippe, A Sarkar, D Pratella… - Cell Genomics, 2024 - cell.com
Summary Long interspersed element 1 (L1) retrotransposons are implicated in human
disease and evolution. Their global activity is repressed by DNA methylation, but …