Unlocking Wheat Drought Tolerance: The Synergy of Omics Data and Computational Intelligence

MS Le Roux, KJ Kunert, CA Cullis… - Food and Energy …, 2024 - Wiley Online Library
ABSTRACT Currently, approximately 4.5 billion people in developing countries consider
bread wheat (Triticum aestivum L.) as a staple food crop, as it is a key source of daily …

The progression in developing genomic resources for crop improvement

P Ruperao, P Rangan, T Shah, V Thakur, S Kalia… - Life, 2023 - mdpi.com
Sequencing technologies have rapidly evolved over the past two decades, and new
technologies are being continually developed and commercialized. The emerging …

[HTML][HTML] Biobutanol Production Using Non-grain Biomass Sorghum saccharatum as a Substrate

OO Tigunova, DB Rakhmetov… - The Open …, 2024 - openagriculturejournal.com
Background The global energy challenge has recently prompted biotechnological research
to explore new non-food substrates of plant origin for obtaining liquid biofuels. One of the …

k-mer-based approaches to bridging pangenomics and population genetics

MD Roberts, O Davis, EB Josephs… - arXiv preprint arXiv …, 2024 - arxiv.org
Many commonly studied species now have more than one chromosome-scale genome
assembly, revealing a large amount of genetic diversity previously missed by approaches …

[HTML][HTML] Overcoming Limitations to Deep Learning in Domesticated Animals with TrioTrain

J Kalleberg, J Rissman, RD Schnabel - bioRxiv, 2024 - ncbi.nlm.nih.gov
Variant calling across diverse species remains challenging as most bioinformatics tools
default to assumptions based on human genomes. DeepVariant (DV) excels without joint …

Bioinformatics Tools for Assessing Drought Stress Tolerance in Crops

NRR Neelapu, KV Chaitanya - Bioinformatics for Plant …, 2024 - Wiley Online Library
Crops are vital sources of food supply for a constantly growing population. The desired traits
in crop plants are improved by breeding and genetic engineering to improve the quality and …

Wide hybridization in sorghum with tertiary gene pool for diversification of parental lines

K Meena, J Jacob, M Bhavyasri, C Aruna… - Crop …, 2024 - Wiley Online Library
Sorghum (S. bicolor) is a great millet that constitutes the staple food in many parts of the
world and is cultivated in the semi‐arid tropics. The grain is bestowed with traits that make it …

Development of a Core Set from Large Germplasm Collections in Genebank

P Ruperao - Bioinformatics for Plant Research and Crop …, 2024 - Wiley Online Library
Genebanks are collections of large germplasm, which are genetic resources providing the
base foundation for plant breeding and crop improvement. The large number of samples …

Previously unmeasured genetic diversity explains part of Lewontin's paradox in a k-mer-based meta-analysis of 112 plant species

M Roberts, EB Josephs - bioRxiv, 2024 - biorxiv.org
At the molecular level, most evolution is expected to be neutral. A key prediction of this
expectation is that the level of genetic diversity in a population should scale with population …

Using k-Mer's aggregation analysis and conscience projection to identify LCSS in normal human genomics and malaria-infected genes

P Vats, AK Saini, GM Upadhyay - AIP Conference Proceedings, 2024 - pubs.aip.org
Combining biomedical and programming for computer studies, the area of computational
biology is a significant field of study. The discovery of individual human Deoxyribose …