Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction

S Tripathi, CGP Voogdt, SO Bassler, M Anderson… - Cell Reports, 2024 - cell.com
Randomly barcoded transposon mutant libraries are powerful tools for studying gene
function and organization, assessing gene essentiality and pathways, discovering potential …

[PDF][PDF] Improving protein production on the level of regulation of both expression and secretion pathways in Bacillus subtilis

Y Song, JM Nikoloff, D Zhan - Journal of microbiology and …, 2015 - koreascience.kr
The well-characterized gram-positive bacterium Bacillus subtilis is an outstanding industrial
candidate for protein expression owing to its single membrane and high capacity of …

Biofilm formation is determinant in tomato rhizosphere colonization by Bacillus velezensis FZB42

A Al-Ali, J Deravel, F Krier, M Béchet, M Ongena… - … Science and Pollution …, 2018 - Springer
In this work, the behavior in tomato rhizosphere of Bacillus velezensis FZB42 was analyzed
taking into account the surfactin production, the use of tomato roots exudate as substrates …

A mimicking-of-DNA-methylation-patterns pipeline for overcoming the restriction barrier of bacteria

G Zhang, W Wang, A Deng, Z Sun, Y Zhang, Y Liang… - 2012 - journals.plos.org
Genetic transformation of bacteria harboring multiple Restriction-Modification (RM) systems
is often difficult using conventional methods. Here, we describe a mimicking-of-DNA …

Screening and characterization of endophytic Bacillus for biocontrol of grapevine downy mildew

X Zhang, Y Zhou, Y Li, X Fu, Q Wang - Crop Protection, 2017 - Elsevier
Grapevine downy mildew, caused by Plasmopara viticola, results in a serious and persistent
disease problem for the grapevine industry worldwide and is difficult to control through …

Development and application of a CRISPR/Cas9 system for Bacillus licheniformis genome editing

C Zhou, H Liu, F Yuan, H Chai, H Wang, F Liu… - International Journal of …, 2019 - Elsevier
A highly efficient genome editing system for Bacillus licheniformis was developed based on
single-plasmid CRISPR/Cas9. For highly efficient genome editing the shuttle vector …

Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum

MJ Hossain, C Ran, K Liu, CM Ryu… - Frontiers in plant …, 2015 - frontiersin.org
To understand the growth-promoting and disease-inhibiting activities of plant growth-
promoting rhizobacteria (PGPR) strains, the genomes of 12 Bacillus subtilis group strains …

Biofilm Formation and Synthesis of Antimicrobial Compounds by the Biocontrol Agent Bacillus velezensis QST713 in an Agaricus bisporus Compost Micromodel

C Pandin, M Darsonval, C Mayeur… - Applied and …, 2019 - Am Soc Microbiol
Bacillus velezensis QST713 is widely used as a biological control agent for crop protection
and disease suppression. This strain is used industrially in France for the protection of …

Surfactin secreted by Bacillus amyloliquefaciens Ba01 is required to combat Streptomyces scabies causing potato common scab

RY Feng, YH Chen, C Lin, CH Tsai, YL Yang… - Frontiers in Plant …, 2022 - frontiersin.org
Potato common scab, which is mainly caused by the bacterium Streptomyces scabies,
occurs in key potato growing regions worldwide. It causes necrotic or corky symptoms on …

Toward Microbiome Engineering: expanding the repertoire of genetically tractable members of the human gut Microbiome

JW Marsh, C Kirk, RE Ley - Annual Review of Microbiology, 2023 - annualreviews.org
Genetic manipulation is necessary to interrogate the functions of microbes in their
environments, such as the human gut microbiome. Yet, the vast majority of human gut …