The Wako-Saitô-Muñoz-Eaton model for predicting protein folding and dynamics

K Ooka, R Liu, M Arai - Molecules, 2022 - mdpi.com
Despite the recent advances in the prediction of protein structures by deep neutral networks,
the elucidation of protein-folding mechanisms remains challenging. A promising theory for …

First order derivatives of thermodynamic functions under assumption of no chemical changes revisited

L Jäntschi, SD Bolboacă - Journal of Computational Science, 2014 - Elsevier
In the field of experimental chemistry, it is extremely useful and necessary to have fast
access to equations that link the physical and chemical parameters to the state. In this …

A generic rotamer model to explain the temperature dependence of BSA protein fluorescence

YC Chou, TY Lin, MY Tsai - Journal of the Chinese Chemical …, 2023 - Wiley Online Library
Protein fluorescence signals essential information about the conformational dynamics of
proteins. Different types of intrinsic fluorophores reflect different protein local or global …

Molecular Dynamics Insight into the Diverse Thermodynamic Behavior of a Beta‐Hairpin Peptide

MY Tsai, JM Yuan, M Yamaki, CK Lin… - Journal of the Chinese …, 2013 - Wiley Online Library
The b‐hairpin is a building block in the β‐sheet structure. Understanding the formation of the
β‐hairpin may provide insight into the formation of β‐sheet structures in, for example, protein …

Thermodynamics and Kinetics of Protein Folding and Aggregation

MY Tsai, JM Yuan, SH Lin - … Studies on Folding, Misfolding, and Self …, 2017 - World Scientific
Thermodynamic and kinetic properties of proteins affect their folding and aggregation
processes, which are responsible for a range of biological functions in cells. This chapter …

Activity and steady‐state kinetics of one‐dimensional kinetic Ising model

KK Liang - Journal of the Chinese Chemical Society, 2023 - Wiley Online Library
In this work, we focused on the kinetics of a one‐dimensional Ising system (1DIS) with
constant nearest‐neighbor interaction (NNI). The exact solution of both thermodynamics and …