The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Apart from protein-coding Ribonucleic acids (RNAs), there exists a variety of non-coding
RNAs (ncRNAs) which regulate complex cellular and molecular processes. High-throughput …

Motivation The convolutional neural network (CNN) has been applied to the classification
problem of DNA sequences, with the additional purpose of motif discovery. The training of …

Structured elements of RNA molecules are essential in, eg, RNA stabilization, localization,
and protein interaction, and their conservation across species suggests a common …

Non-coding RNAs (ncRNAs) ubiquitously exist in normal and cancer cells. Despite their
prevalent distribution, the functions of most long ncRNAs remain uncharacterized. The …

Riboswitches are metabolite or ion sensing cis-regulatory elements that regulate the
expression of the associated genes involved in biosynthesis or transport of the …

RNA secondary structures play essential roles in the formation of the tertiary structure and
function of a transcript. Recent genome-wide studies highlight significant potential for RNA …

Non-coding Ribonucleic acids (ncRNAs) are functional RNA molecules that transcribe from
DNA, but cannot be translated into proteins. These ncRNAs function to control the gene …

Background RNA plays essential roles in all known forms of life. Clustering RNA sequences
with common sequence and structure is an essential step towards studying RNA function …

Archaeal genomes are densely packed; thus, correct transcription termination is an
important factor for orchestrated gene expression. A systematic analysis of RNA 3´ termini, to …