Engineering living therapeutics with synthetic biology

A Cubillos-Ruiz, T Guo, A Sokolovska… - Nature Reviews Drug …, 2021 - nature.com
The steadfast advance of the synthetic biology field has enabled scientists to use genetically
engineered cells, instead of small molecules or biologics, as the basis for the development …

Microbiome engineering: synthetic biology of plant-associated microbiomes in sustainable agriculture

J Ke, B Wang, Y Yoshikuni - Trends in Biotechnology, 2021 - cell.com
To support an ever-increasing population, modern agriculture faces numerous challenges
that pose major threats to global food and energy security. Plant-associated microbes, with …

Automated model-predictive design of synthetic promoters to control transcriptional profiles in bacteria

TL LaFleur, A Hossain, HM Salis - Nature communications, 2022 - nature.com
Transcription rates are regulated by the interactions between RNA polymerase, sigma factor,
and promoter DNA sequences in bacteria. However, it remains unclear how non-canonical …

Engineering living and regenerative fungal–bacterial biocomposite structures

RM McBee, M Lucht, N Mukhitov, M Richardson… - Nature Materials, 2022 - nature.com
Engineered living materials could have the capacity to self-repair and self-replicate, sense
local and distant disturbances in their environment, and respond with functionalities for …

Advanced methods for natural products discovery: bioactivity screening, dereplication, metabolomics profiling, genomic sequencing, databases and informatic tools …

SP Gaudêncio, E Bayram, L Lukić Bilela, M Cueto… - Marine drugs, 2023 - mdpi.com
Natural Products (NP) are essential for the discovery of novel drugs and products for
numerous biotechnological applications. The NP discovery process is expensive and time …

Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria

RC Hurt, MT Buss, M Duan, K Wong, MY You… - Nature …, 2023 - nature.com
Ultrasound allows imaging at a much greater depth than optical methods, but existing
genetically encoded acoustic reporters for in vivo cellular imaging have been limited by poor …

Automated design of thousands of nonrepetitive parts for engineering stable genetic systems

A Hossain, E Lopez, SM Halper, DP Cetnar… - Nature …, 2020 - nature.com
Engineered genetic systems are prone to failure when their genetic parts contain repetitive
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …

High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration

JR Elmore, GN Dexter, H Baldino, JD Huenemann… - Science …, 2023 - science.org
Efficient genome engineering is critical to understand and use microbial functions. Despite
recent development of tools such as CRISPR-Cas gene editing, efficient integration of …

Metagenomic approaches for understanding new concepts in microbial science

LF Alves, CA Westmann, GL Lovate… - … journal of genomics, 2018 - Wiley Online Library
Over the past thirty years, since the dawn of metagenomic studies, a completely new (micro)
universe was revealed, with the potential to have profound impacts on many aspects of the …

Synthetic biology enables programmable cell‐based biosensors

M Hicks, TT Bachmann, B Wang - ChemPhysChem, 2020 - Wiley Online Library
Cell‐based biosensors offer cheap, portable and simple methods of detecting molecules of
interest but have yet to be truly adopted commercially. Issues with their performance and …