Prebiotic peptides: Molecular hubs in the origin of life

M Frenkel-Pinter, M Samanta, G Ashkenasy… - Chemical …, 2020 - ACS Publications
The fundamental roles that peptides and proteins play in today's biology makes it almost
indisputable that peptides were key players in the origin of life. Insofar as it is appropriate to …

RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

The effects of temperature on cellular physiology

BD Knapp, KC Huang - Annual Review of Biophysics, 2022 - annualreviews.org
Temperature impacts biological systems across all length and timescales. Cells and the
enzymes that comprise them respond to temperature fluctuations on short timescales, and …

Translation in prokaryotes

MV Rodnina - Cold Spring Harbor perspectives in …, 2018 - cshperspectives.cshlp.org
This review summarizes our current understanding of translation in prokaryotes, focusing on
the mechanistic and structural aspects of each phase of translation: initiation, elongation …

Root of the tree: the significance, evolution, and origins of the ribosome

JC Bowman, AS Petrov, M Frenkel-Pinter… - Chemical …, 2020 - ACS Publications
The ribosome is an ancient molecular fossil that provides a telescope to the origins of life.
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …

History of the ribosome and the origin of translation

AS Petrov, B Gulen, AM Norris… - Proceedings of the …, 2015 - National Acad Sciences
We present a molecular-level model for the origin and evolution of the translation system,
using a 3D comparative method. In this model, the ribosome evolved by accretion …

What recent ribosome structures have revealed about the mechanism of translation

TM Schmeing, V Ramakrishnan - Nature, 2009 - nature.com
The high-resolution structures of ribosomal subunits published in 2000 have revolutionized
the field of protein translation. They facilitated the determination and interpretation of …

Expanding the substrate scope of pyrrolysyl-transfer RNA synthetase enzymes to include non-α-amino acids in vitro and in vivo

R Fricke, CV Swenson, LT Roe, NX Hamlish, B Shah… - Nature …, 2023 - nature.com
The absence of orthogonal aminoacyl-transfer RNA (tRNA) synthetases that accept non-l-α-
amino acids is a primary bottleneck hindering the in vivo translation of sequence-defined …

Structures of the bacterial ribosome at 3.5 A resolution

BS Schuwirth, MA Borovinskaya, CW Hau, W Zhang… - Science, 2005 - science.org
We describe two structures of the intact bacterial ribosome from Escherichia coli determined
to a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a detailed …

Interactions between temperature and nutrients across levels of ecological organization

WF Cross, JM Hood, JP Benstead… - Global change …, 2015 - Wiley Online Library
Temperature and nutrient availability play key roles in controlling the pathways and rates at
which energy and materials move through ecosystems. These factors have also changed …