Explainable deep learning in plant phenotyping

S Mostafa, D Mondal, K Panjvani, L Kochian… - Frontiers in Artificial …, 2023 - frontiersin.org
The increasing human population and variable weather conditions, due to climate change,
pose a threat to the world's food security. To improve global food security, we need to …

A systematic review of effective hardware and software factors affecting high-throughput plant phenotyping

F Solimani, A Cardellicchio, M Nitti, A Lako, G Dimauro… - Information, 2023 - mdpi.com
Plant phenotyping studies the complex characteristics of plants, with the aim of evaluating
and assessing their condition and finding better exemplars. Recently, a new branch …

GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa

MF Nagle, J Yuan, D Kaur, C Ma… - G3: Genes …, 2024 - academic.oup.com
Plant regeneration is an important dimension of plant propagation and a key step in the
production of transgenic plants. However, regeneration capacity varies widely among …

Predicting dry pea maturity using machine learning and advanced sensor fusion with unmanned aerial systems (UASs)

A Bazrafkan, H Navasca, JH Kim, M Morales… - Remote Sensing, 2023 - mdpi.com
Maturity is an important trait in dry pea breeding programs, but the conventional process
predominately used to measure this trait can be time-consuming, labor-intensive, and prone …

Detection of oilseed rape clubroot based on low-field nuclear magnetic resonance imaging

L Feng, S Chen, B Wu, Y Liu, W Tang, F Liu… - … and Electronics in …, 2024 - Elsevier
Plant root diseases threat plant growth and eventually cause plant death without proper
treatment. It is difficult to diagnose root diseases without digging the roots from the soil, and it …

Phenotyping Alfalfa (Medicago sativa L.) Root Structure Architecture via Integrating Confident Machine Learning with ResNet-18

BJ Weihs, Z Tang, Z Tian, DJ Heuschele… - Plant …, 2024 - spj.science.org
Background: Root system architecture (RSA) is of growing interest in implementing plant
improvements with belowground root traits. Modern computing technology applied to …

[HTML][HTML] Genetic diversity in Ethiopian sorghum germplasm for root system architecture and trait association

ME Duresso, D Lule, A Tirfessa, D Gelmesa, T Tesso… - Rhizosphere, 2023 - Elsevier
Sorghum productivity in arid and semi-arid regions of Africa is very low, mainly due to limited
water availability. Roots are the primary conduit for plants to access moisture and nutrients …

GWAS identifies candidate genes controlling adventitious rooting in Populus trichocarpa

MF Nagle, J Yuan, D Kaur, C Ma… - Horticulture …, 2023 - academic.oup.com
Adventitious rooting (AR) is critical to the propagation, breeding, and genetic engineering of
trees. The capacity for plants to undergo this process is highly heritable and of a polygenic …

Phenotyping of Salvia miltiorrhiza Roots Reveals Associations between Root Traits and Bioactive Components

J Chen, Y Wang, P Di, Y Wu, S Qiu, Z Lv, Y Qiao… - Plant …, 2023 - spj.science.org
Plant phenomics aims to perform high-throughput, rapid, and accurate measurement of plant
traits, facilitating the identification of desirable traits and optimal genotypes for crop …

Transcriptomics and metabolomics revealed that phosphate improves the cold tolerance of alfalfa

Y Wang, Z Sun, Q Wang, J Xie, L Yu - Frontiers in Plant Science, 2023 - frontiersin.org
Introduction Alfalfa (Medicago sativa L.) is a highly nutritious leguminous forage that plays
an essential role in animal husbandry. In the middle and high latitudes of the northern …