The functional diversity of the POUV-class proteins across vertebrates

EI Bakhmet, AN Tomilin - Open Biology, 2022 - royalsocietypublishing.org
POUV is a relatively newly emerged class of POU transcription factors present in jawed
vertebrates (Gnathostomata). The function of POUV-class proteins is inextricably linked to …

Retrotransposons in pluripotent stem cells

J Wang, J Huang, G Shi - Cell Regeneration, 2020 - Springer
Transposable elements constitute about half of the mammalian genome, and can be divided
into two classes: the class I (retrotransposons) and the class II (DNA transposons). A few …

Phylostratic shift of whole-genome duplications in normal mammalian tissues towards unicellularity is driven by developmental bivalent genes and reveals a link to …

OV Anatskaya, AE Vinogradov… - International Journal of …, 2020 - mdpi.com
Tumours were recently revealed to undergo a phylostratic and phenotypic shift to
unicellularity. As well, aggressive tumours are characterized by an increased proportion of …

TOBF1 modulates mouse embryonic stem cell fate through regulating alternative splicing of pluripotency genes

M Aich, AH Ansari, L Ding, V Iesmantavicius, D Paul… - Cell Reports, 2023 - cell.com
Embryonic stem cells (ESCs) can undergo lineage-specific differentiation, giving rise to
different cell types that constitute an organism. Although roles of transcription factors and …

Tryptophan hydroxylase-2-mediated serotonin biosynthesis suppresses cell reprogramming into pluripotent state

SA Sinenko, AA Kuzmin, EV Skvortsova… - International Journal of …, 2023 - mdpi.com
The monoamine neurotransmitter serotonin (5-hydroxytryptamine, 5-HT) has important
functions both in the neural system and during embryonic development in mammals. In this …

Human AlphoidtetO Artificial Chromosome as a Gene Therapy Vector for the Developing Hemophilia A Model in Mice

SV Ponomartsev, SA Sinenko, EV Skvortsova… - Cells, 2020 - mdpi.com
Human artificial chromosomes (HACs), including the de novo synthesized alphoidtetO-HAC,
are a powerful tool for introducing genes of interest into eukaryotic cells. HACs are …

SOX2 interacts with hnRNPK to modulate alternative splicing in mouse embryonic stem cells

Y Huang, Y Liu, M Pu, Y Zhang, Q Cao, S Li, Y Wei… - Cell & Bioscience, 2024 - Springer
Background SOX2 is a determinant transcription factor that governs the balance between
stemness and differentiation by influencing transcription and splicing programs. The role of …

Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early …

H Castillo, P Hanna, LM Sachs, N Buisine, F Godoy… - Cells & Development, 2024 - Elsevier
While understanding the genetic underpinnings of osteogenesis has far-reaching
implications for skeletal diseases and evolution, a comprehensive characterization of the …

Phase separation of RNA-binding protein promotes polymerase engagement and transcription

W Shao, X Bi, B Gao, J Wu, Y Pan, Y Yin, Z Liu… - BioRxiv, 2021 - biorxiv.org
An RNA-involved phase-separation model has been proposed for transcription control. Yet,
the molecular links that connect RNA binding to the transcription machinery remain missing …

Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution

H Castillo, F Godoy, C Gilbert, F Aguilera, S Spicuglia… - bioRxiv, 2023 - biorxiv.org
Understanding the genetic mechanisms underpinning the differentiation of osteoblasts, the
bone producing cells, has far reaching implications for skeletal diseases and evolution. To …