Tracing the peopling of the world through genomics

R Nielsen, JM Akey, M Jakobsson, JK Pritchard… - Nature, 2017 - nature.com
Advances in the sequencing and the analysis of the genomes of both modern and ancient
peoples have facilitated a number of breakthroughs in our understanding of human …

Haplotype phasing: existing methods and new developments

SR Browning, BL Browning - Nature Reviews Genetics, 2011 - nature.com
Determination of haplotype phase is becoming increasingly important as we enter the era of
large-scale sequencing because many of its applications, such as imputing low-frequency …

Visualizing spatial population structure with estimated effective migration surfaces

D Petkova, J Novembre, M Stephens - Nature genetics, 2016 - nature.com
Genetic data often exhibit patterns broadly consistent with'isolation by distance'—a
phenomenon where genetic similarity decays with geographic distance. In a heterogeneous …

The genetics of Mexico recapitulates Native American substructure and affects biomedical traits

A Moreno-Estrada, CR Gignoux, JC Fernández-López… - Science, 2014 - science.org
Mexico harbors great cultural and ethnic diversity, yet fine-scale patterns of human genome-
wide variation from this region remain largely uncharacterized. We studied genomic …

[HTML][HTML] Genomic patterns of homozygosity in worldwide human populations

TJ Pemberton, D Absher, MW Feldman… - The American Journal of …, 2012 - cell.com
Genome-wide patterns of homozygosity runs and their variation across individuals provide a
valuable and often untapped resource for studying human genetic diversity and evolutionary …

Using environmental correlations to identify loci underlying local adaptation

G Coop, D Witonsky, A Di Rienzo, JK Pritchard - Genetics, 2010 - academic.oup.com
Loci involved in local adaptation can potentially be identified by an unusual correlation
between allele frequencies and important ecological variables or by extreme allele …

Genomic runs of homozygosity record population history and consanguinity

M Kirin, R McQuillan, CS Franklin, H Campbell… - PloS one, 2010 - journals.plos.org
The human genome is characterised by many runs of homozygous genotypes, where
identical haplotypes were inherited from each parent. The length of each run is determined …

Consanguinity, human evolution, and complex diseases

AH Bittles, ML Black - … of the National Academy of Sciences, 2010 - National Acad Sciences
There is little information on inbreeding during the critical early years of human existence.
However, given the small founding group sizes and restricted mate choices it seems …

Reconstructing the population genetic history of the Caribbean

A Moreno-Estrada, S Gravel, F Zakharia… - PLoS …, 2013 - journals.plos.org
The Caribbean basin is home to some of the most complex interactions in recent history
among previously diverged human populations. Here, we investigate the population genetic …

Parental relatedness through time revealed by runs of homozygosity in ancient DNA

H Ringbauer, J Novembre, M Steinrücken - Nature communications, 2021 - nature.com
Parental relatedness of present-day humans varies substantially across the globe, but little
is known about the past. Here we analyze ancient DNA, leveraging that parental relatedness …