The global significance of biodiversity science in China: an overview

X Mi, G Feng, Y Hu, J Zhang, L Chen… - National Science …, 2021 - academic.oup.com
Biodiversity science in China has seen rapid growth over recent decades, ranging from
baseline biodiversity studies to understanding the processes behind evolution across …

Genome sequencing and population genomics in non-model organisms

H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

L Chen, Q Qiu, YU Jiang, K Wang, Z Lin, Z Li, F Bibi… - Science, 2019 - science.org
INTRODUCTION The ruminants are one of the most successful mammalian lineages,
exhibiting extensive morphological and ecological diversity and containing several key …

Distinct longevity mechanisms across and within species and their association with aging

A Tyshkovskiy, S Ma, AV Shindyapina, S Tikhonov… - Cell, 2023 - cell.com
Lifespan varies within and across species, but the general principles of its control remain
unclear. Here, we conducted multi-tissue RNA-seq analyses across 41 mammalian species …

Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia

N Chen, Y Cai, Q Chen, R Li, K Wang, Y Huang… - Nature …, 2018 - nature.com
Cattle domestication and the complex histories of East Asian cattle breeds warrant further
investigation. Through analysing the genomes of 49 modern breeds and eight East Asian …

Seasonal dynamics of diet–gut microbiota interaction in adaptation of yaks to life at high altitude

N Guo, Q Wu, F Shi, J Niu, T Zhang… - npj Biofilms and …, 2021 - nature.com
Dietary selection and intake affect the survival and health of mammals under extreme
environmental conditions. It has been suggested that dietary composition is a key driver of …

Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3

MV Han, GWC Thomas… - … biology and evolution, 2013 - academic.oup.com
Current sequencing methods produce large amounts of data, but genome assemblies
constructed from these data are often fragmented and incomplete. Incomplete and error …

A field guide to whole‐genome sequencing, assembly and annotation

R Ekblom, JBW Wolf - Evolutionary applications, 2014 - Wiley Online Library
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

M Li, S Tian, L Jin, G Zhou, Y Li, Y Zhang, T Wang… - Nature …, 2013 - nature.com
We report the sequencing at 131× coverage, de novo assembly and analyses of the genome
of a female Tibetan wild boar. We also resequenced the whole genomes of 30 Tibetan wild …

[PDF][PDF] Convergent evolution of rumen microbiomes in high-altitude mammals

Z Zhang, D Xu, LI Wang, J Hao, J Wang, X Zhou… - Current Biology, 2016 - cell.com
Studies of genetic adaptation, a central focus of evolutionary biology, most often focus on the
host's genome and only rarely on its co-evolved microbiome. The Qinghai-Tibetan Plateau …