High frequency of transition to transversion ratio in the stem region of RNA secondary structure of untranslated region of SARS-CoV-2

M Dash, P Meher, A Kumar, SS Satapathy, ND Namsa - PeerJ, 2024 - peerj.com
Methods We have considered the experimentally determined and well documented stem
and loop regions of 5′ and 3′ UTR regions of SARS-CoV-2 for base substitution analysis …

DNA barcoding Clithon sp.(Gastropoda: Neritidae) from Badur Beach, Madura, Indonesia, based on COI gene molecular marker

IS DJOEMHARSJAH, R AMBARWATI… - Biodiversitas Journal of …, 2023 - smujo.id
Djoemharsjah IS, Ambarwati R, Rahayu DA. 2023. DNA barcoding Clithonsp.(Gastropoda:
Neritidae) from Badur Beach, Madura, Indonesia, based on COI gene molecular marker …

Difference in synonymous polymorphism related to codon degeneracy between co-transcribed genes in the genome of Escherichia coli.

PK Beura, P Sen, R Aziz, C Chetia… - Current Science …, 2023 - search.ebscohost.com
In our study, we compared synonymous polymorphism in co-transcribed gene pairs within
five well-known Escherichia coli operons (rpoB/C, lacZ/Y, kdpA/B, araB/A and bcsA/B) …

Mitochondrial DNA markers reveal stock composition and genetic diversity of Ompok bimaculatus: a valuable resource for aquaculture diversification

S Mandal, LM Chowdhury, S Chaturvedi… - Proceedings of the …, 2024 - Springer
Genetic diversity and population structure are essential aspects for understanding the
evolutionary history, conservation as well as species diversification in freshwater …

Codon usage in conserved sites is more biased compared to variable sites in the SARS-CoV-2 genome

M Dash, A Kurmi, P Meher… - International …, 2024 - inderscienceonline.com
High error rate in SARS-CoV-2 genome replication allows the virus to adapt to different
environments and selective pressures. In this study, 35% of codons of the protein-coding …

Authentication of Barbonymus spp. From Lake Singkarak Using DNA Barcoding: Authentication of Barbonymus spp. From Lake Singkarak using DNA Barcoding

VM Salis, DI Roesma, DH Tjong - Journal of Tropical Life Science, 2024 - jtrolis.ub.ac.id
The local community distinguishes between Barbonymus belinka (Balingka) and
Barbonymus schwanefeldii (Kapiek) in Lake Singkarak based on size due to the …

Synonymous and non-synonymous transitions/transversions vividly disclose purifying selection in Escherichia coli coding sequences

PK Beura, R Aziz, P Sen, S Das, ND Namsa, EJ Feil… - bioRxiv, 2022 - biorxiv.org
Transition (ti) and transversion (tv) are the major causes for genome variation. The accurate
estimation of ti to tv ratio in genomes is crucial for understanding of mutational and selection …

[PDF][PDF] Codon degeneracy as well as pretermination codons influence transition to transversion ratio in coding sequences 2

PK Beura, R Aziz, P Sen, S Das, ND Namsa, EJ Feil… - academia.edu
Transition to transversion ratio (ti/tv) is important in understanding the mutational bias in the
16 evolution of an organism. Since synonymous polymorphism for two-fold degenerate …

[PDF][PDF] ХАРАКТЕРИЗАЦІЯ ВІДКРИТИХ РАМОК ЗЧИТУВАННЯ ВІРУСУ ГЕПАТИТУ Е СВИНІ ГЕНОТИПУ 3

ОЮ Лиманська - jvm.kharkov.ua
Метою роботи було визначення особливостей структурної організації трьох відкритих
рамок зчитування ORF1–ORF3 вірусу гепатиту Е свині генотипу 3. Тиск відбору на гени …

[PDF][PDF] Pratyush Kumar Beura*, Ruksana Aziz, Piyali Sen, Saurav Das, Nima Dondu Namsa, Edward J Feil

SS Satapathy, SK Ray - researchgate.net
Page 1 Transition to transversion ratio (ti/tv) is important in understanding the mutational bias
in the evolution of an organism. Since synonymous polymorphism for two-fold degenerate …