Function and information content of DNA methylation

D Schübeler - Nature, 2015 - nature.com
Cytosine methylation is a DNA modification generally associated with transcriptional
silencing. Factors that regulate methylation have been linked to human disease, yet how …

Spatially resolved transcriptomics and beyond

N Crosetto, M Bienko, A Van Oudenaarden - Nature Reviews Genetics, 2015 - nature.com
Considerable progress in sequencing technologies makes it now possible to study the
genomic and transcriptomic landscape of single cells. However, to better understand the …

[HTML][HTML] A unique microglia type associated with restricting development of Alzheimer's disease

H Keren-Shaul, A Spinrad, A Weiner… - Cell, 2017 - cell.com
Alzheimer's disease (AD) is a detrimental neurodegenerative disease with no effective
treatments. Due to cellular heterogeneity, defining the roles of immune cell subsets in AD …

Dissecting immune circuits by linking CRISPR-pooled screens with single-cell RNA-seq

DA Jaitin, A Weiner, I Yofe, D Lara-Astiaso… - Cell, 2016 - cell.com
In multicellular organisms, dedicated regulatory circuits control cell type diversity and
responses. The crosstalk and redundancies within these circuits and substantial cellular …

Classification of low quality cells from single-cell RNA-seq data

T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger… - Genome biology, 2016 - Springer
Single-cell RNA sequencing (scRNA-seq) has broad applications across biomedical
research. One of the key challenges is to ensure that only single, live cells are included in …

Integrated genome and transcriptome sequencing of the same cell

SS Dey, L Kester, B Spanjaard, M Bienko… - Nature …, 2015 - nature.com
Single-cell genomics and single-cell transcriptomics have emerged as powerful tools to
study the biology of single cells at a genome-wide scale. However, a major challenge is to …

Single-cell droplet microfluidics for biomedical applications

D Liu, M Sun, J Zhang, R Hu, W Fu, T Xuanyuan, W Liu - Analyst, 2022 - pubs.rsc.org
Single-cell manipulation and analysis is critical to the study of many fundamental biological
processes and uncovering cellular heterogeneity, and presents the potential for extremely …

Bio‐Coreactant‐Enhanced Electrochemiluminescence Microscopy of Intracellular Structure and Transport

C Ma, S Wu, Y Zhou, HF Wei, J Zhang… - Angewandte …, 2021 - Wiley Online Library
A bio‐coreactant‐enhanced electrochemiluminescence (ECL) microscopy realizes the ECL
imaging of intracellular structure and dynamic transport. This microscopy uses Ru (bpy) 32+ …

Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment

JC Van Wolfswinkel, DE Wagner, PW Reddien - Cell stem cell, 2014 - cell.com
Planarians are flatworms capable of regenerating any missing body region. This capacity is
mediated by neoblasts, a proliferative cell population that contains pluripotent stem cells …

Single-cell analysis in cancer genomics

A Saadatpour, S Lai, G Guo, GC Yuan - Trends in Genetics, 2015 - cell.com
Genetic changes and environmental differences result in cellular heterogeneity among
cancer cells within the same tumor, thereby complicating treatment outcomes. Recent …