[图书][B] Mixed effects models for the population approach: models, tasks, methods and tools

M Lavielle - 2014 - books.google.com
Wide-Ranging Coverage of Parametric Modeling in Linear and Nonlinear Mixed Effects
Models Mixed Effects Models for the Population Approach: Models, Tasks, Methods and …

What population reveals about individual cell identity: single-cell parameter estimation of models of gene expression in yeast

A Llamosi, AM Gonzalez-Vargas… - PLoS computational …, 2016 - journals.plos.org
Significant cell-to-cell heterogeneity is ubiquitously observed in isogenic cell populations.
Consequently, parameters of models of intracellular processes, usually fitted to population …

Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

M Karlsson, DLI Janzén, L Durrieu… - BMC systems …, 2015 - Springer
Background Studies of cell-to-cell variation have in recent years grown in interest, due to
improved bioanalytical techniques which facilitates determination of small changes with high …

A nonlinear mixed effects approach for modeling the cell-to-cell variability of Mig1 dynamics in yeast

J Almquist, L Bendrioua, CB Adiels, M Goksör… - PloS one, 2015 - journals.plos.org
The last decade has seen a rapid development of experimental techniques that allow data
collection from individual cells. These techniques have enabled the discovery and …

Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks

J Ruess, J Lygeros - ACM Transactions on Modeling and Computer …, 2015 - dl.acm.org
Continuous-time Markov chains are commonly used in practice for modeling biochemical
reaction networks in which the inherent randomness of the molecular interactions cannot be …

Identifying stochastic biochemical networks from single-cell population experiments: A comparison of approaches based on the Fisher information

J Ruess, J Lygeros - 52nd IEEE conference on decision and …, 2013 - ieeexplore.ieee.org
In biochemical reaction networks stochasticity arising from molecular fluctuations often plays
an important role. Recent years have seen an increasing number of studies which employed …

Towards real-time control of gene expression at the single cell level: a stochastic control approach

LRM Maruthi, I Tkachev, A Carta, E Cinquemani… - … Methods in Systems …, 2014 - Springer
Recent works have demonstrated the experimental feasibility of real-time gene expression
control based on deterministic controllers. By taking control of the level of intracellular …

Validation methods for population models of gene expression dynamics

AM González-Vargas, E Cinquemani… - IFAC-PapersOnLine, 2016 - Elsevier
The advent of experimental techniques for the time-course monitoring of gene expression at
the single-cell level has paved the way to the model-based study of gene expression …

Grey-box techniques for the identification of a controlled gene expression model

F Parise, J Ruess, J Lygeros - 2014 European Control …, 2014 - ieeexplore.ieee.org
The aim of this paper is to propose a computationally efficient technique for the identification
of stochastic biochemical networks, involving only zero and first order reactions, from …

[图书][B] Kinetic Models in Life Science: Contributions to Methods and Applications

J Almquist - 2017 - search.proquest.com
Kinetic models in life science combine mathematics and biology to answer questions from
areas such as cell biology, physiology, biotechnology, and drug development. The idea of …