Advances and prospects in metabolic engineering of Zymomonas mobilis

X Wang, Q He, Y Yang, J Wang, K Haning, Y Hu… - Metabolic …, 2018 - Elsevier
Biorefinery of biomass-based biofuels and biochemicals by microorganisms is a competitive
alternative of traditional petroleum refineries. Zymomonas mobilis is a natural ethanologen …

Regulatory non-coding sRNAs in bacterial metabolic pathway engineering

AN Leistra, NC Curtis, LM Contreras - Metabolic engineering, 2019 - Elsevier
Non-coding RNAs (ncRNAs) are versatile and powerful controllers of gene expression that
have been increasingly linked to cellular metabolism and phenotype. In bacteria, identified …

Construction of a gene knockdown system based on catalytically inactive (“dead”) Cas9 (dCas9) in Staphylococcus aureus

C Zhao, X Shu, B Sun - Applied and environmental microbiology, 2017 - Am Soc Microbiol
There has been an absence of an efficient method of gene knockdown in the important
human pathogen Staphylococcus aureus like RNA interference in eukaryotes. The …

Synthetic biology of small RNAs and riboswitches

JK Villa, Y Su, LM Contreras… - Microbiology …, 2018 - Am Soc Microbiol
In bacteria and archaea, small RNAs (sRNAs) regulate complex networks through antisense
interactions with target mRNAs in trans, and riboswitches regulate gene expression in cis …

Modulating pathogenesis with mobile-CRISPRi

J Qu, NK Prasad, MA Yu, S Chen, A Lyden… - Journal of …, 2019 - Am Soc Microbiol
Conditionally essential (CE) genes are required by pathogenic bacteria to establish and
maintain infections. CE genes encode virulence factors, such as secretion systems and …

Integrative FourD omics approach profiles the target network of the carbon storage regulatory system

SW Sowa, G Gelderman, AN Leistra… - Nucleic acids …, 2017 - academic.oup.com
Multi-target regulators represent a largely untapped area for metabolic engineering and anti-
bacterial development. These regulators are complex to characterize because they often act …

Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in Zymomonas mobilis

R Han, K Haning, JC Gonzalez-Rivera… - … in Bioengineering and …, 2020 - frontiersin.org
sRNAs represent a powerful class of regulators that influences multiple mRNA targets in
response to environmental changes. However, very few direct sRNA–sRNA interactions …

[HTML][HTML] Development of antisense RNA-mediated quantifiable inhibition for metabolic regulation

R Zhang, Y Zhang, J Wang, Y Yang, Y Yan - Metabolic engineering …, 2021 - Elsevier
Trans-regulating elements such as noncoding RNAs are crucial in modifying cells, and has
shown broad application in synthetic biology, metabolic engineering and RNA therapies …

Retargeting a dual-acting sRNA for multiple mRNA transcript regulation

A Lahiry, SD Stimple, DW Wood… - ACS synthetic biology, 2017 - ACS Publications
Multitargeting small regulatory RNAs (sRNAs) represent a potentially useful tool for
metabolic engineering applications. Natural multitargeting sRNAs govern bacterial gene …

Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible …

J Vazquez-Anderson, MK Mihailovic… - Nucleic acids …, 2017 - academic.oup.com
Current approaches to design efficient antisense RNAs (asRNAs) rely primarily on a
thermodynamic understanding of RNA–RNA interactions. However, these approaches …