Should evolutionary geneticists worry about higher-order epistasis?

DM Weinreich, Y Lan, CS Wylie… - Current opinion in …, 2013 - Elsevier
Natural selection drives evolving populations up the fitness landscape, the projection from
nucleotide sequence space to organismal reproductive success. While it has long been …

Empirical fitness landscapes reveal accessible evolutionary paths

FJ Poelwijk, DJ Kiviet, DM Weinreich, SJ Tans - Nature, 2007 - nature.com
When attempting to understand evolution, we traditionally rely on analysing evolutionary
outcomes, despite the fact that unseen intermediates determine its course. A handful of …

Directed enzyme evolution: climbing fitness peaks one amino acid at a time

CA Tracewell, FH Arnold - Current opinion in chemical biology, 2009 - Elsevier
Directed evolution can generate a remarkable range of new enzyme properties. Alternate
substrate specificities and reaction selectivities are readily accessible in enzymes from …

Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

DJ Kvitek, G Sherlock - PLoS genetics, 2011 - journals.plos.org
The fitness landscape captures the relationship between genotype and evolutionary fitness
and is a pervasive metaphor used to describe the possible evolutionary trajectories of …

Evolvability and hierarchy in rewired bacterial gene networks

M Isalan, C Lemerle, K Michalodimitrakis, C Horn… - Nature, 2008 - nature.com
Sequencing DNA from several organisms has revealed that duplication and drift of existing
genes have primarily moulded the contents of a given genome. Though the effect of …

Stepwise acquisition of pyrimethamine resistance in the malaria parasite

ER Lozovsky, T Chookajorn… - Proceedings of the …, 2009 - National Acad Sciences
The spread of high-level pyrimethamine resistance in Africa threatens to curtail the
therapeutic lifetime of antifolate antimalarials. We studied the possible evolutionary …

Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes

FJ Poelwijk, S Tănase-Nicola, DJ Kiviet… - Journal of theoretical …, 2011 - Elsevier
Having multiple peaks within fitness landscapes critically affects the course of evolution, but
whether their presence imposes specific requirements at the level of genetic interactions …

The influence of higher-order epistasis on biological fitness landscape topography

DM Weinreich, Y Lan, J Jaffe… - Journal of statistical …, 2018 - Springer
The effect of a mutation on the organism often depends on what other mutations are already
present in its genome. Geneticists refer to such mutational interactions as epistasis. Pairwise …

Impact of epistasis and pleiotropy on evolutionary adaptation

B Østman, A Hintze, C Adami - Proceedings of the …, 2012 - royalsocietypublishing.org
Evolutionary adaptation is often likened to climbing a hill or peak. While this process is
simple for fitness landscapes where mutations are independent, the interaction between …

Breaking evolutionary constraint with a tradeoff ratchet

MGJ De Vos, A Dawid… - Proceedings of the …, 2015 - National Acad Sciences
Epistatic interactions can frustrate and shape evolutionary change. Indeed, phenotypes may
fail to evolve when essential mutations are only accessible through positive selection if they …