Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks

P Dibaeinia, S Sinha - Nucleic acids research, 2021 - academic.oup.com
Deciphering the sequence-function relationship encoded in enhancers holds the key to
interpreting non-coding variants and understanding mechanisms of transcriptomic variation …

Transcriptional regulatory genomics: from mechanistic modeling to causal inference

P Dibaeinia - 2023 - ideals.illinois.edu
Gene transcription refers to the process in which coding regions on the genome are copied
into mRNA molecules through complex cellular mechanisms. This process is regulated …