Gas-phase infrared spectroscopy of neutral peptides: Insights from the far-IR and THz domain

S Bakels, MP Gaigeot, AM Rijs - Chemical reviews, 2020 - ACS Publications
Gas-phase, double resonance IR spectroscopy has proven to be an excellent approach to
obtain structural information on peptides ranging from single amino acids to large peptides …

Some opinions on MD-based vibrational spectroscopy of gas phase molecules and their assembly: An overview of what has been achieved and where to go

MP Gaigeot - Spectrochimica Acta Part A: Molecular and …, 2021 - Elsevier
We hereby review molecular dynamics simulations for anharmonic gas phase spectroscopy
and provide some of our opinions of where the field is heading. With these new directions …

Unraveling Water Solvation Effects with Quantum Mechanics/Molecular Mechanics Semiclassical Vibrational Spectroscopy: The Case of Thymidine

D Moscato, G Mandelli, M Bondanza… - Journal of the …, 2024 - ACS Publications
We introduce a quantum mechanics/molecular mechanics semiclassical method for studying
the solvation process of molecules in water at the nuclear quantum mechanical level with …

The infrared spectroscopy of compact polycyclic aromatic hydrocarbons containing up to 384 carbons

A Ricca, CW Bauschlicher, C Boersma… - The Astrophysical …, 2012 - iopscience.iop.org
The mid-and the far-infrared spectra of polycyclic aromatic hydrocarbons (PAHs) have been
computed using density functional theory. This study has focused on PAHs in the highly …

RPMDrate: Bimolecular chemical reaction rates from ring polymer molecular dynamics

YV Suleimanov, JW Allen, WH Green - Computer Physics Communications, 2013 - Elsevier
We present RPMDrate, a computer program for the calculation of gas phase bimolecular
reaction rate coefficients using the ring polymer molecular dynamics (RPMD) method. The …

Probing computational methodologies in predicting mid-infrared spectra for large polycyclic aromatic hydrocarbons

B Kerkeni, I García-Bernete… - Monthly Notices of …, 2022 - academic.oup.com
We extend the prediction of vibrational spectra to large sized polycyclic aromatic
hydrocarbon (PAH) molecules comprising up to∼ 1500 carbon atoms by evaluating the …

Classical, Thermostated Ring Polymer, and Quantum VSCF/VCI Calculations of IR Spectra of H7O3+ and H9O4+ (Eigen) and Comparison with Experiment

Q Yu, JM Bowman - The Journal of Physical Chemistry A, 2019 - ACS Publications
We report vibrational IR spectra of the protonated water clusters H7O3+ and H9O4+ (Eigen)
in the range from 0 to 4000 cm–1, from classical molecular dynamics (MD) and thermostated …

Dissociation of polycyclic aromatic hydrocarbons: molecular dynamics studies

A Simon, M Rapacioli, G Rouaut… - … of the Royal …, 2017 - royalsocietypublishing.org
We present dynamical studies of the dissociation of polycyclic aromatic hydrocarbon (PAH)
radical cations in their ground electronic states with significant internal energy. Molecular …

Quantum approaches to vibrational dynamics and spectroscopy: is ease of interpretation sacrificed as rigor increases?

C Qu, JM Bowman - Physical Chemistry Chemical Physics, 2019 - pubs.rsc.org
The subject of this Perspective is quantum approaches, beyond the harmonic
approximation, to vibrational dynamics and IR spectroscopy. We begin with a pedagogical …

Infrared and Raman spectroscopy from ab initio molecular dynamics and static normal mode analysis: The C–H region of DMSO as a case study

SA Fischer, TW Ueltschi, PZ El-Khoury… - The Journal of …, 2016 - ACS Publications
Carbon–hydrogen (C–H) vibration modes serve as key probes in the chemical identification
of hydrocarbons and in vibrational sum-frequency generation spectroscopy of hydrocarbons …