Basic overview of chemoinformatics

T Engel - Journal of chemical information and modeling, 2006 - ACS Publications
There is no particular point in time that determines when chemoinformatics was founded or
established. It slowly evolved from several, often quite humble beginnings. Scientists in …

Automation of the CHARMM General Force Field (CGenFF) I: bond perception and atom typing

K Vanommeslaeghe… - Journal of chemical …, 2012 - ACS Publications
Molecular mechanics force fields are widely used in computer-aided drug design for the
study of drug-like molecules alone or interacting with biological systems. In simulations …

Using molecular equivalence numbers to visually explore structural features that distinguish chemical libraries

YJ Xu, M Johnson - Journal of chemical information and computer …, 2002 - ACS Publications
A molecular equivalence number (meqnum) classifies a molecule with respect to a class of
structural features or topological shapes such as its cyclic system or its set of functional …

Review of ring perception algorithms for chemical graphs

GM Downs, VJ Gillet, JD Holliday… - Journal of chemical …, 1989 - ACS Publications
Current ring perception algorithms for use on chemical graphs concentrate on processing
specific structures. In this review, the various published ring perception algorithms are …

Chemical graphs: looking back and glimpsing ahead

AT Balaban - Journal of Chemical Information and Computer …, 1995 - ACS Publications
Graph-theoretical applications to chemistry are reviewed from a personal point of view in the
context of the gradual acceptance of the value of such applications by the chemical and …

Algorithm for naming molecular equivalence classes represented by labeled pseudographs

Y Xu, M Johnson - Journal of Chemical Information and Computer …, 2001 - ACS Publications
The emergence of large chemical databases imposes a need for organizing the compounds
in these databases. Mapping the chemical graph in particular, and a molecular equivalence …

Reduced graphs and their applications in chemoinformatics

K Birchall, VJ Gillet - Chemoinformatics and computational chemical …, 2011 - Springer
Reduced graphs provide summary representations of chemical structures by collapsing
groups of connected atoms into single nodes while preserving the topology of the original …

An efficient algorithm for enumerating chordless cycles and chordless paths

T Uno, H Satoh - International Conference on Discovery Science, 2014 - Springer
A chordless cycle (induced cycle) C of a graph is a cycle without any chord, meaning that
there is no edge outside the cycle connecting two vertices of the cycle. A chordless path is …

[图书][B] Fundamental QSARs for metal ions

JD Walker, MC Newman, M Enache - 2012 - books.google.com
Fundamental QSARs for Metal Ions describes the basic and essential applications of
quantitative structure–activity relationships (QSARs) for regulatory or industrial scientists …

A new algorithm for exhaustive ring perception in a molecular graph

T Hanser, P Jauffret, G Kaufmann - Journal of Chemical …, 1996 - ACS Publications
A new fast and easy to implement algorithm for exhaustive ring perception is presented. This
algorithm is based upon a progressive reduction (collapsing) of the path graph associated …