[HTML][HTML] Library preparation for next generation sequencing: A review of automation strategies

JF Hess, TA Kohl, M Kotrová, K Rönsch… - Biotechnology …, 2020 - Elsevier
Next generation sequencing is in the process of evolving from a technology used for
research purposes to one which is applied in clinical diagnostics. Recently introduced high …

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

CJ Meehan, GA Goig, TA Kohl, L Verboven… - NATURE reviews …, 2019 - nature.com
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has rapidly progressed
from a research tool to a clinical application for the diagnosis and management of …

25 years of surveillance of drug-resistant tuberculosis: achievements, challenges, and way forward

AS Dean, OT Auguet, P Glaziou, M Zignol… - The Lancet Infectious …, 2022 - thelancet.com
Tuberculosis is second only to COVID-19 as a cause of death from a single infectious agent.
In 2020, almost 10 million people were estimated to have developed tuberculosis and it …

MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates

TA Kohl, C Utpatel, V Schleusener, MR De Filippo… - PeerJ, 2018 - peerj.com
Analyzing whole-genome sequencing data of Mycobacterium tuberculosis complex (MTBC)
isolates in a standardized workflow enables both comprehensive antibiotic resistance …

Ancient and recent differences in the intrinsic susceptibility of Mycobacterium tuberculosis complex to pretomanid

A Bateson, J Ortiz Canseco, TD McHugh… - Journal of …, 2022 - academic.oup.com
Objectives To develop a robust phenotypic antimicrobial susceptibility testing (AST) method
with a correctly set breakpoint for pretomanid (Pa), the most recently approved anti …

[图书][B] Catalogue of mutations in Mycobacterium tuberculosis complex and their association with drug resistance

World Health Organization - 2023 - books.google.com
Page 1 Catalogue of mutations in Mycobacterium tuberculosis complex and their
association with drug resistance Second edition Page 2 Page 3 Catalogue of mutations in …

Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement

J Domínguez, MJ Boeree, E Cambau… - The Lancet Infectious …, 2023 - thelancet.com
Drug-resistant tuberculosis is a substantial health-care concern worldwide. Despite culture-
based methods being considered the gold standard for drug susceptibility testing, molecular …

Travel-related antimicrobial resistance: a systematic review

H Bokhary, KNA Pangesti, H Rashid… - Tropical Medicine and …, 2021 - mdpi.com
There is increasing evidence that human movement facilitates the global spread of resistant
bacteria and antimicrobial resistance (AMR) genes. We systematically reviewed the …

The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology

CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter… - …, 2018 - thelancet.com
Background Tracking recent transmission is a vital part of controlling widespread pathogens
such as Mycobacterium tuberculosis. Multiple methods with specific performance …

Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system

J Crispell, CH Benton, D Balaz, N De Maio… - Elife, 2019 - elifesciences.org
Quantifying pathogen transmission in multi-host systems is difficult, as exemplified in bovine
tuberculosis (bTB) systems, but is crucial for control. The agent of bTB, Mycobacterium bovis …