Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy

KC Neuman, A Nagy - Nature methods, 2008 - nature.com
Single-molecule force spectroscopy has emerged as a powerful tool to investigate the forces
and motions associated with biological molecules and enzymatic activity. The most common …

Probing the relation between force—lifetime—and chemistry in single molecular bonds

E Evans - Annual review of biophysics and biomolecular …, 2001 - annualreviews.org
▪ Abstract On laboratory time scales, the energy landscape of a weak bond along a
dissociation pathway is fully explored through Brownian-thermal excitations, and energy …

[HTML][HTML] Twisting and stretching single DNA molecules

T Strick, JF Allemand, V Croquette… - Progress in biophysics and …, 2000 - Elsevier
The elastic properties of DNA are essential for its biological function. They control its
bending and twisting as well as the induction of structural modifications in the molecule …

Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA

J Lipfert, GM Skinner, JM Keegstra… - Proceedings of the …, 2014 - National Acad Sciences
RNA plays myriad roles in the transmission and regulation of genetic information that are
fundamentally constrained by its mechanical properties, including the elasticity and …

Single-molecule analysis of DNA uncoiling by a type II topoisomerase

TR Strick, V Croquette, D Bensimon - Nature, 2000 - nature.com
Type II DNA topoisomerases are ubiquitous ATP-dependent enzymes capable of
transporting a DNA through a transient double-strand break in a second DNA segment. This …

Quantitative modeling and optimization of magnetic tweezers

J Lipfert, X Hao, NH Dekker - Biophysical journal, 2009 - cell.com
Magnetic tweezers are a powerful tool to manipulate single DNA or RNA molecules and to
study nucleic acid-protein interactions in real time. Here, we have modeled the magnetic …

Stretching of macromolecules and proteins

TR Strick, MN Dessinges, G Charvin… - Reports on Progress …, 2002 - iopscience.iop.org
In this paper we review the biophysics revealed by stretching single biopolymers. During the
last decade various techniques have emerged allowing micromanipulation of single …

[图书][B] Soft condensed matter physics in molecular and cell biology

WCK Poon, D Andelman - 2006 - taylorfrancis.com
Soft condensed matter physics, which emerged as a distinct branch of physics in the 1990s,
studies complex fluids: liquids in which structures with length scale between the molecular …

High-resolution, genome-wide mapping of positive supercoiling in chromosomes

MS Guo, R Kawamura, ML Littlehale, JF Marko… - Elife, 2021 - elifesciences.org
Supercoiling impacts DNA replication, transcription, protein binding to DNA, and the three-
dimensional organization of chromosomes. However, there are currently no methods to …

Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids

J Lipfert, M Wiggin, JWJ Kerssemakers… - Nature …, 2011 - nature.com
The double-stranded nature of DNA links its replication, transcription and repair to rotational
motion and torsional strain. Magnetic tweezers (MT) are a powerful single-molecule …