Protein SUMOylation modification and its associations with disease

Y Yang, Y He, X Wang, Z Liang, G He… - Open …, 2017 - royalsocietypublishing.org
SUMOylation, as a post-translational modification, plays essential roles in various biological
functions including cell growth, migration, cellular responses to stress and tumorigenesis …

Large-scale comparative assessment of computational predictors for lysine post-translational modification sites

Z Chen, X Liu, F Li, C Li, T Marquez-Lago… - Briefings in …, 2019 - academic.oup.com
Lysine post-translational modifications (PTMs) play a crucial role in regulating diverse
functions and biological processes of proteins. However, because of the large volumes of …

GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs

Q Zhao, Y Xie, Y Zheng, S Jiang, W Liu… - Nucleic acids …, 2014 - academic.oup.com
Small ubiquitin-like modifiers (SUMOs) regulate a variety of cellular processes through two
distinct mechanisms, including covalent sumoylation and non-covalent SUMO interaction …

JASSA: a comprehensive tool for prediction of SUMOylation sites and SIMs

G Beauclair, A Bridier-Nahmias, JF Zagury… - …, 2015 - academic.oup.com
Motivation: Post-translational modification by the Small Ubiquitin-like Modifier (SUMO)
proteins, a process termed SUMOylation, is involved in many fundamental cellular …

dForml (KNN)-PseAAC: Detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components

Q Ning, Z Ma, X Zhao - Journal of theoretical biology, 2019 - Elsevier
Formylation is a type of post-translational modification that can occur on lysine sites, which
plays an irreplaceable role in organism. To better understand the mechanism, it is necessary …

Rad18-dependent SUMOylation of human specialized DNA polymerase eta is required to prevent under-replicated DNA

E Despras, M Sittewelle, C Pouvelle, N Delrieu… - Nature …, 2016 - nature.com
Translesion polymerase eta (polη) was characterized for its ability to replicate ultraviolet-
induced DNA lesions that stall replicative polymerases, a process promoted by Rad18 …

A microRNA processing defect in smokers' macrophages is linked to SUMOylation of the endonuclease DICER

TJ Gross, LS Powers, RL Boudreau, B Brink… - Journal of Biological …, 2014 - ASBMB
Despite the fact that alveolar macrophages play an important role in smoking-related
disease, little is known about what regulates their pathophysiologic phenotype. Evaluating …

SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications

CC Chang, CH Tung, CW Chen, CH Tu, YW Chu - Scientific reports, 2018 - nature.com
Most modern tools used to predict sites of small ubiquitin-like modifier (SUMO) binding
(referred to as SUMOylation) use algorithms, chemical features of the protein, and …

Emerging roles of sumoylation in the regulation of actin, microtubules, intermediate filaments, and septins

A Alonso, M Greenlee, J Matts, J Kline, KJ Davis… - …, 2015 - Wiley Online Library
Sumoylation is a powerful regulatory system that controls many of the critical processes in
the cell, including DNA repair, transcriptional regulation, nuclear transport, and DNA …

SUMOhydro: a novel method for the prediction of sumoylation sites based on hydrophobic properties

YZ Chen, Z Chen, YA Gong, G Ying - PloS one, 2012 - journals.plos.org
Sumoylation is one of the most essential mechanisms of reversible protein post-translational
modifications and is a crucial biochemical process in the regulation of a variety of important …