A brief survey of text mining: Classification, clustering and extraction techniques

M Allahyari, S Pouriyeh, M Assefi, S Safaei… - arXiv preprint arXiv …, 2017 - arxiv.org
The amount of text that is generated every day is increasing dramatically. This tremendous
volume of mostly unstructured text cannot be simply processed and perceived by computers …

[HTML][HTML] Biomedical text mining and its applications in cancer research

F Zhu, P Patumcharoenpol, C Zhang, Y Yang… - Journal of biomedical …, 2013 - Elsevier
Cancer is a malignant disease that has caused millions of human deaths. Its study has a
long history of well over 100years. There have been an enormous number of publications on …

Recent advances in network-based methods for disease gene prediction

SK Ata, M Wu, Y Fang, L Ou-Yang… - Briefings in …, 2021 - academic.oup.com
Disease–gene association through genome-wide association study (GWAS) is an arduous
task for researchers. Investigating single nucleotide polymorphisms that correlate with …

[HTML][HTML] Causal relationship extraction from biomedical text using deep neural models: A comprehensive survey

A Akkasi, MF Moens - Journal of biomedical informatics, 2021 - Elsevier
The identification of causal relationships between events or entities within biomedical texts
is of great importance for creating scientific knowledge bases and is also a fundamental …

No evidence of a common DNA variant profile specific to world class endurance athletes

T Rankinen, N Fuku, B Wolfarth, G Wang… - PloS one, 2016 - journals.plos.org
There are strong genetic components to cardiorespiratory fitness and its response to
exercise training. It would be useful to understand the differences in the genomic profile of …

A review of prostate cancer genome-wide association studies (GWAS)

S Benafif, Z Kote-Jarai, RA Eeles - Cancer Epidemiology, Biomarkers & …, 2018 - AACR
Prostate cancer is the most common cancer in men in Europe and the United States. The
genetic heritability of prostate cancer is contributed to by both rarely occurring genetic …

Preclinical validation of therapeutic targets predicted by tensor factorization on heterogeneous graphs

S Paliwal, A de Giorgio, D Neil, JB Michel… - Scientific reports, 2020 - nature.com
Incorrect drug target identification is a major obstacle in drug discovery. Only 15% of drugs
advance from Phase II to approval, with ineffective targets accounting for over 50% of these …

GediNET for discovering gene associations across diseases using knowledge based machine learning approach

E Qumsiyeh, L Showe, M Yousef - Scientific reports, 2022 - nature.com
The most common approaches to discovering genes associated with specific diseases are
based on machine learning and use a variety of feature selection techniques to identify …

Mutated ATP10B increases Parkinson's disease risk by compromising lysosomal glucosylceramide export

S Martin, S Smolders, C Van den Haute… - Acta …, 2020 - Springer
Parkinson's disease (PD) is a progressive neurodegenerative brain disease presenting with
a variety of motor and non-motor symptoms, loss of midbrain dopaminergic neurons in the …

Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat

YJ Sung, L Pérusse, MA Sarzynski… - International journal of …, 2016 - nature.com
Background: To identify loci associated with abdominal fat and replicate prior findings, we
performed genome-wide association (GWA) studies of abdominal fat traits: subcutaneous …