[HTML][HTML] Towards similarity-based differential diagnostics for common diseases

K Slater, A Karwath, JA Williams, S Russell… - Computers in biology …, 2021 - Elsevier
Ontology-based phenotype profiles have been utilised for the purpose of differential
diagnosis of rare genetic diseases, and for decision support in specific disease domains …

Komenti: a semantic text mining framework

LT Slater, W Bradlow, R Hoehndorf, DFA Motti, S Ball… - bioRxiv, 2020 - biorxiv.org
Komenti is a reasoner-enabled semantic query and information extraction framework. It is
the only text mining tool that enables querying inferred knowledge from biomedical …

[HTML][HTML] Multi-faceted semantic clustering with text-derived phenotypes

K Slater, JA Williams, A Karwath, H Fanning… - Computers in biology …, 2021 - Elsevier
Identification of ontology concepts in clinical narrative text enables the creation of phenotype
profiles that can be associated with clinical entities, such as patients or drugs. Constructing …

Exploring binary relations for ontology extension and improved adaptation to clinical text

LT Slater, R Hoehndorf, A Karwath, GV Gkoutos - bioRxiv, 2020 - biorxiv.org
Background The controlled domain vocabularies provided by ontologies make them an
indispensable tool for text mining. Ontologies also include semantic features in the form of …