Ten years of pathway analysis: current approaches and outstanding challenges
Pathway analysis has become the first choice for gaining insight into the underlying biology
of differentially expressed genes and proteins, as it reduces complexity and has increased …
of differentially expressed genes and proteins, as it reduces complexity and has increased …
Less label, more free: approaches in label‐free quantitative mass spectrometry
In this review we examine techniques, software, and statistical analyses used in label‐free
quantitative proteomics studies for area under the curve and spectral counting approaches …
quantitative proteomics studies for area under the curve and spectral counting approaches …
WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update
J Ye, Y Zhang, H Cui, J Liu, Y Wu, Y Cheng… - Nucleic acids …, 2018 - academic.oup.com
Abstract WEGO (Web Gene Ontology Annotation Plot), created in 2006, is a simple but
useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results …
useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results …
Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions
Arbuscular mycorrhizal fungi (AMF) are prominent root symbionts that can carry thousands
of nuclei deriving from two parental strains in a large syncytium. These co-existing genomes …
of nuclei deriving from two parental strains in a large syncytium. These co-existing genomes …
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …
Coordination of plant growth and abiotic stress responses by tryptophan synthase β subunit 1 through modulation of tryptophan and ABA homeostasis in Arabidopsis
To adapt to changing environments, plants have evolved elaborate regulatory mechanisms
balancing their growth with stress responses. It is currently unclear whether and how the …
balancing their growth with stress responses. It is currently unclear whether and how the …
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
DW Huang, BT Sherman, RA Lempicki - Nucleic acids research, 2009 - academic.oup.com
Functional analysis of large gene lists, derived in most cases from emerging high-throughput
genomic, proteomic and bioinformatics scanning approaches, is still a challenging and …
genomic, proteomic and bioinformatics scanning approaches, is still a challenging and …
Genome of wild olive and the evolution of oil biosynthesis
Here we present the genome sequence and annotation of the wild olive tree (Olea europaea
var. sylvestris), called oleaster, which is considered an ancestor of cultivated olive trees …
var. sylvestris), called oleaster, which is considered an ancestor of cultivated olive trees …
Dynamic transcriptome landscape of maize embryo and endosperm development
Maize (Zea mays) is an excellent cereal model for research on seed development because
of its relatively large size for both embryo and endosperm. Despite the importance of seed in …
of its relatively large size for both embryo and endosperm. Despite the importance of seed in …
Strigolactones Improve Plant Growth, Photosynthesis, and Alleviate Oxidative Stress under Salinity in Rapeseed (Brassica napus L.) by Regulating Gene Expression
N Ma, C Hu, L Wan, Q Hu, J Xiong… - Frontiers in plant …, 2017 - frontiersin.org
Rapeseed (Brassica napus L.) is a very important edible oil crop in the world, and the
production is inhibited by abiotic stresses, such as salinity. Plant hormones can alleviate the …
production is inhibited by abiotic stresses, such as salinity. Plant hormones can alleviate the …