The role of real-time in biomedical science: A meta-analysis on computational complexity, delay and speedup

O Faust, W Yu, UR Acharya - Computers in biology and medicine, 2015 - Elsevier
Purpose: The concept of real-time is very important, as it deals with the realizability of
computer based health care systems. Method: In this paper we review biomedical real-time …

A generic parallel framework for inferring large-scale gene regulatory networks from expression profiles: application to Alzheimer's disease network

S Sebastian, S Roy, J Kalita - Briefings in Bioinformatics, 2023 - academic.oup.com
The inference of large-scale gene regulatory networks is essential for understanding
comprehensive interactions among genes. Most existing methods are limited to …

[HTML][HTML] FastGCN: a GPU accelerated tool for fast gene co-expression networks

M Liang, F Zhang, G Jin, J Zhu - PloS one, 2015 - journals.plos.org
Gene co-expression networks comprise one type of valuable biological networks. Many
methods and tools have been published to construct gene co-expression networks; …

Inference of dynamic spatial GRN models with multi-GPU evolutionary computation

R Mousavi, SH Konuru, D Lobo - Briefings in Bioinformatics, 2021 - academic.oup.com
Reverse engineering mechanistic gene regulatory network (GRN) models with a specific
dynamic spatial behavior is an inverse problem without analytical solutions in general …

[HTML][HTML] Accelerated parallel algorithm for gene network reverse engineering

J He, Z Zhou, M Reed, A Califano - BMC systems biology, 2017 - Springer
Abstract Background The Algorithm for the Reconstruction of Accurate Cellular Networks
(ARACNE) represents one of the most effective tools to reconstruct gene regulatory networks …

Plb-hec: A profile-based load-balancing algorithm for heterogeneous cpu-gpu clusters

L Sant'Ana, D Cordeiro… - 2015 IEEE International …, 2015 - ieeexplore.ieee.org
The use of GPU clusters for scientific applications in areas such as physics, chemistry and
bioinformatics is becoming more widespread. These clusters frequently have different types …

IEEE802. 16/WiMAX-based broadband wireless networks: Protocol engineering, applications, and services

E Hossain - … Networks and Services Research (CNSR'07), 2007 - ieeexplore.ieee.org
IEEE 802.16/WiMAX-based broadband and mobile wireless access is expected to be a
significant component in the next generation (eg, beyond 3G, 4G) wireless systems. IEEE …

[HTML][HTML] Gfd-net: A novel semantic similarity methodology for the analysis of gene networks

JJ Díaz-Montaña, N Díaz-Díaz… - Journal of biomedical …, 2017 - Elsevier
Since the popularization of biological network inference methods, it has become crucial to
create methods to validate the resulting models. Here we present GFD-Net, the first …

[PDF][PDF] Comparing MapReduce and Spark in Computing the PCC Matrix in Gene Co-expression Networks

NA Samee, NH Osman… - International Journal of …, 2021 - researchgate.net
Correlation between gene expression profiles across multiple samples and the identification
of inter-gene interactions is a critical technique for Co-expression networking. Due to the …

PLB-HAC: dynamic load-balancing for heterogeneous accelerator clusters

L Sant'Ana, D Cordeiro, RY de Camargo - Euro-Par 2019: Parallel …, 2019 - Springer
Efficient usage of Heterogeneous clusters containing combinations of CPUs and
accelerators, such as GPUs and Xeon Phi boards requires balancing the computational load …