[HTML][HTML] Detection of on-target and off-target mutations generated by CRISPR/Cas9 and other sequence-specific nucleases

J Zischewski, R Fischer, L Bortesi - Biotechnology advances, 2017 - Elsevier
The development of customizable sequence-specific nucleases such as TALENs, ZFNs and
the powerful CRISPR/Cas9 system has revolutionized the field of genome editing. The …

Efficient targeted multiallelic mutagenesis in tetraploid potato (Solanum tuberosum) by transient CRISPR-Cas9 expression in protoplasts

M Andersson, H Turesson, A Nicolia, AS Fält… - Plant cell reports, 2017 - Springer
Key message Altered starch quality with full knockout of GBSS gene function in potato was
achieved using CRISPR-Cas9 technology, through transient transfection and regeneration …

Technologies and computational analysis strategies for CRISPR applications

K Clement, JY Hsu, MC Canver, JK Joung, L Pinello - Molecular cell, 2020 - cell.com
The CRISPR-Cas system offers a programmable platform for eukaryotic genome and
epigenome editing. The ability to perform targeted genetic and epigenetic perturbations …

[HTML][HTML] Genome-scale exon perturbation screens uncover exons critical for cell fitness

MS Xiao, AP Damodaran, B Kumari, E Dickson, K Xing… - Molecular Cell, 2024 - cell.com
CRISPR-Cas technology has transformed functional genomics, yet understanding of how
individual exons differentially shape cellular phenotypes remains limited. Here, we …

Epigenomic profiling of primary gastric adenocarcinoma reveals super-enhancer heterogeneity

WF Ooi, M Xing, C Xu, X Yao, MK Ramlee… - Nature …, 2016 - nature.com
Regulatory enhancer elements in solid tumours remain poorly characterized. Here we apply
micro-scale chromatin profiling to survey the distal enhancer landscape of primary gastric …

A simple and efficient method for CRISPR/Cas9-induced mutant screening

Y Hua, C Wang, J Huang, K Wang - Journal of genetics and genomics, 2017 - Elsevier
The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-
associated protein 9 (Cas9) system provides a technological breakthrough in mutant …

Genotyping genome‐edited mutations in plants using CRISPR ribonucleoprotein complexes

Z Liang, K Chen, Y Yan, Y Zhang… - Plant Biotechnology …, 2018 - Wiley Online Library
Despite the great achievements in genome editing, accurately detecting mutations induced
by sequence‐specific nucleases is still a challenge in plants, especially in polyploidy plants …

Adaptation to spindle assembly checkpoint inhibition through the selection of specific aneuploidies

MAY Adell, TC Klockner, R Höfler… - Genes & …, 2023 - genesdev.cshlp.org
Both the presence of an abnormal complement of chromosomes (aneuploidy) and an
increased frequency of chromosome missegregation (chromosomal instability) are …

A simplified method for identifying early CRISPR-induced indels in zebrafish embryos using High Resolution Melting analysis

É Samarut, A Lissouba, P Drapeau - BMC genomics, 2016 - Springer
Abstract Background The CRISPR/Cas9 system has become a regularly used tool for editing
the genome of many model organisms at specific sites. However, two limiting steps arise in …

MARCH6 and TRC8 facilitate the quality control of cytosolic and tail‐anchored proteins

S Stefanovic‐Barrett, AS Dickson, SP Burr… - EMBO …, 2018 - embopress.org
Misfolded or damaged proteins are typically targeted for destruction by proteasome‐
mediated degradation, but the mammalian ubiquitin machinery involved is incompletely …