GREENER principles for environmentally sustainable computational science

L Lannelongue, HEG Aronson, A Bateman… - Nature Computational …, 2023 - nature.com
The carbon footprint of scientific computing is substantial, but environmentally sustainable
computational science (ESCS) is a nascent field with many opportunities to thrive. To realize …

Gut dysbiosis in patients with chronic pain: a systematic review and meta-analysis

L Goudman, T Demuyser, JG Pilitsis, M Billot… - Frontiers in …, 2024 - frontiersin.org
Introduction Recent evidence supports the contribution of gut microbiota dysbiosis to the
pathophysiology of rheumatic diseases, neuropathic pain, and neurodegenerative …

Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy

Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald… - Msystems, 2022 - Am Soc Microbiol
We introduce the operational genomic unit (OGU) method, a metagenome analysis strategy
that directly exploits sequence alignment hits to individual reference genomes as the …

Airborne microorganisms and key environmental factors shaping their community patterns in the core production area of the Maotai-flavor Baijiu

J Zhou, X Li, S Li, H Ding, Y Lang, P Xu, C Wang… - Science of the Total …, 2024 - Elsevier
Airborne microorganisms are important parts of the Moutai-flavor Baijiu brewing microbial
community, which directly affects the quality of Baijiu. However, environmental factors …

Effects of supplementing a yeast culture in a pelleted total mixed ration on fiber degradation, fermentation parameters, and the bacterial community in the rumen of …

X Wang, F Li, N Zhang, E Ungerfeld, L Guo… - Animal Feed Science …, 2023 - Elsevier
Feeding animals with pelleted total mixed ration (TMR) is a widespread practice as it
reduces feed losses during storage, feeding and the animal's sorting. Supplementation of …

Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies

C Brennan, P Belda-Ferre, S Zuffa… - …, 2024 - journals.asm.org
Large-scale studies are essential to answer questions about complex microbial communities
that can be extremely dynamic across hosts, environments, and time points. However …

Responses of a soil fungal community to severe windstorm damages in an old silver fir stand

F Venice, A Vizzini, R Danti, G Della Rocca… - Frontiers in …, 2023 - frontiersin.org
Forests are increasingly threatened by climate change and the Anthropocene seems to have
favored the emergence and adaptation of pathogens. Robust monitoring methods are …

Upcycling Human Excrement: The Gut Microbiome to Soil Microbiome Axis

J Meilander, C Herman, A Manley, G Augustine… - arXiv preprint arXiv …, 2024 - arxiv.org
Human excrement composting (HEC) is a sustainable strategy for human excrement (HE)
management that recycles nutrients and mitigates health risks while reducing reliance on …

Evaluation of the representative of using rumen fluid samples from lambs fed pelleted TMR for analysis of prokaryotic communities

Z Ma, J Zhou, T Liu, C Zheng - Frontiers in Microbiology, 2023 - frontiersin.org
The pelleted TMR pulverized the grass during processing, which may result in more solid
attached microorganisms in the filtered rumen fluid. The objective of this study was …

Microbiome time series data reveal predictable patterns of change

Z Karwowska, P Szczerbiak, T Kosciolek - Microbiology Spectrum, 2024 - journals.asm.org
The human gut microbiome is crucial in health and disease. Longitudinal studies are
becoming increasingly important compared to traditional cross-sectional approaches, as …