Bioinformatics approaches for understanding the consequences of mutations to the binding affinity of protein–DNA complexes

K Harini, A Phogat, MM Gromiha - … MUTATIONS: Consequences on …, 2025 - World Scientific
Protein–nucleic acid interactions are inevitable in maintaining the homeostasis of cells. It is
important to have a quantitative understanding of these interactions, generally described in …

Prediction of Protein‒DNA Interface Hot Spots Based on Empirical Mode Decomposition and Machine Learning

Z Fang, Z Li, M Li, Z Yue, K Li - Genes, 2024 - mdpi.com
Protein–DNA complex interactivity plays a crucial role in biological activities such as gene
expression, modification, replication and transcription. Understanding the physiological …

Protein-DNA interface hotspots prediction based on fusion features of embeddings of protein language model and handcrafted features

X Li, GA Wang, Z Wei, H Wang, X Zhu - Computational Biology and …, 2023 - Elsevier
The identification of hotspot residues at the protein-DNA binding interfaces plays a crucial
role in various aspects such as drug discovery and disease treatment. Although …

of mutations to the binding affinity of protein-DNA complexes

K Harini¹, A Phogat¹, MM Gromiha - … : Consequences On Structure …, 2024 - books.google.com
Protein-nucleic acid interactions are inevitable in maintaining the homeostasis of cells. It is
important to have a quantitative understanding of these interactions, generally described in …