Current status and applications of genome-scale metabolic models
Genome-scale metabolic models (GEMs) computationally describe gene-protein-reaction
associations for entire metabolic genes in an organism, and can be simulated to predict …
associations for entire metabolic genes in an organism, and can be simulated to predict …
Designing microbial cell factories for the production of chemicals
The sustainable production of chemicals from renewable, nonedible biomass has emerged
as an essential alternative to address pressing environmental issues arising from our heavy …
as an essential alternative to address pressing environmental issues arising from our heavy …
Recent advances in systems and synthetic biology approaches for developing novel cell-factories in non-conventional yeasts
Microbial bioproduction of chemicals, proteins, and primary metabolites from cheap carbon
sources is currently an advancing area in industrial research. The model yeast …
sources is currently an advancing area in industrial research. The model yeast …
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models
MetaNetX/MNXref is a reconciliation of metabolites and biochemical reactions providing
cross-links between major public biochemistry and Genome-Scale Metabolic Network …
cross-links between major public biochemistry and Genome-Scale Metabolic Network …
Metabolic engineering in the host Yarrowia lipolytica
The nonconventional, oleaginous yeast, Yarrowia lipolytica is rapidly emerging as a
valuable host for the production of a variety of both lipid and nonlipid chemical products …
valuable host for the production of a variety of both lipid and nonlipid chemical products …
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Genome-scale metabolic models (GEMs) have been widely used for quantitative exploration
of the relation between genotype and phenotype. Streamlined integration of enzyme …
of the relation between genotype and phenotype. Streamlined integration of enzyme …
[HTML][HTML] Synthetic biology tools for engineering Yarrowia lipolytica
M Larroudé, T Rossignol, JM Nicaud… - Biotechnology …, 2018 - Elsevier
The non-conventional oleaginous yeast Yarrowia lipolytica shows great industrial promise. It
naturally produces certain compounds of interest but can also artificially generate non-native …
naturally produces certain compounds of interest but can also artificially generate non-native …
Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability
Filamentous fungi drive carbon and nutrient cycling across our global ecosystems, through
its interactions with growing and decaying flora and their constituent microbiomes. The …
its interactions with growing and decaying flora and their constituent microbiomes. The …
Host-mycobiome metabolic interactions in health and disease
Fungal communities (mycobiome) have an important role in sustaining the resilience of
complex microbial communities and maintenance of homeostasis. The mycobiome remains …
complex microbial communities and maintenance of homeostasis. The mycobiome remains …
Synthetic biology, systems biology, and metabolic engineering of Yarrowia lipolytica toward a sustainable biorefinery platform
Yarrowia lipolytica is an oleaginous yeast that has been substantially engineered for
production of oleochemicals and drop-in transportation fuels. The unique acetyl …
production of oleochemicals and drop-in transportation fuels. The unique acetyl …