Transcriptional regulatory elements in the human genome

GA Maston, SK Evans, MR Green - Annu. Rev. Genomics Hum …, 2006 - annualreviews.org
The faithful execution of biological processes requires a precise and carefully orchestrated
set of steps that depend on the proper spatial and temporal expression of genes. Here we …

Cracking the RNA polymerase II CTD code

S Egloff, S Murphy - Trends in genetics, 2008 - cell.com
The carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II comprises
multiple tandem conserved heptapeptide repeats, unique to this eukaryotic RNA …

Coactivators in PPAR‐regulated gene expression

N Viswakarma, Y Jia, L Bai, A Vluggens… - PPAR …, 2010 - Wiley Online Library
Peroxisome proliferator‐activated receptor (PPAR) α, β (also known as δ), and γ function as
sensors for fatty acids and fatty acid derivatives and control important metabolic pathways …

Directed evolution in mammalian cells

SJ Hendel, MD Shoulders - Nature Methods, 2021 - nature.com
Directed evolution experiments are typically carried out using in vitro systems, bacteria, or
yeast—even when the goal is to probe or modulate mammalian biology. Performing directed …

The CAG–polyglutamine repeat diseases: a clinical, molecular, genetic, and pathophysiologic nosology

CA Stoyas, AR La Spada - Handbook of clinical neurology, 2018 - Elsevier
Throughout the genome, unstable tandem nucleotide repeats can expand to cause a variety
of neurologic disorders. Expansion of a CAG triplet repeat within a coding exon gives rise to …

Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets

J van de Peppel, N Kettelarij, H van Bakel… - Molecular cell, 2005 - cell.com
Mediator is an evolutionarily conserved coregulator of RNA polymerase II transcription.
Microarray structure-function analysis of S. cerevisiae Mediator reveals functional …

Transcription under the control of nuclear Arm/β-catenin

R Städeli, R Hoffmans, K Basler - Current biology, 2006 - cell.com
The Wingless/Wnt pathway controls cell fates during animal development and regulates
tissue homeostasis as well as stem cell number and differentiation in epithelia. Deregulation …

The Mediator complex in plants: structure, phylogeny, and expression profiling of representative genes in a dicot (Arabidopsis) and a monocot (rice) during …

S Mathur, S Vyas, S Kapoor, AK Tyagi - Plant physiology, 2011 - academic.oup.com
Abstract The Mediator (Med) complex relays regulatory information from DNA-bound
transcription factors to the RNA polymerase II in eukaryotes. This macromolecular unit is …

The revolution and evolution of shotgun proteomics for large-scale proteome analysis

JR Yates III - Journal of the American Chemical Society, 2013 - ACS Publications
Mass spectrometry has evolved at an exponential rate over the last 100 years. Innovations in
the development of mass spectrometers have created powerful instruments capable of …

Performance of a linear ion trap-Orbitrap hybrid for peptide analysis

JR Yates, D Cociorva, L Liao, V Zabrouskov - Analytical chemistry, 2006 - ACS Publications
Proteomic analysis of digested complex protein mixtures has become a useful strategy to
identify proteins involved in biological processes. We have evaluated the use of a new mass …