Recombination and the maintenance of plant organelle genome stability

A Maréchal, N Brisson - New Phytologist, 2010 - Wiley Online Library
Like their nuclear counterpart, the plastid and mitochondrial genomes of plants have to be
faithfully replicated and repaired to ensure the normal functioning of the plant. Inability to …

Plant phylogeography based on organelle genes: an introduction

RJ Petit, GG Vendramin - … : Evolutionary perspectives on the origins and …, 2007 - Springer
Plants have unique biological attributes of great interest to researchers investigating
population dynamics. Yet, until recently, organelle DNA had been seldom utilized for …

Plastid genomes of seed plants

RK Jansen, TA Ruhlman - Genomics of chloroplasts and mitochondria, 2012 - Springer
The field of comparative plastid genomics has burgeoned during the past decade, largely
due to the availability of rapid, less expensive genome sequencing technologies. Currently …

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage

MM Guisinger, JV Kuehl, JL Boore… - Molecular biology and …, 2011 - academic.oup.com
Geraniaceae plastid genomes (plastomes) have experienced a remarkable number of
genomic changes. The plastomes of Erodium texanum, Geranium palmatum, and Monsonia …

Polyphyletic origin of cultivated rice: based on the interspersion pattern of SINEs

C Cheng, R Motohashi, S Tsuchimoto… - Molecular Biology …, 2003 - academic.oup.com
The wild rice species Oryza rufipogon with wide intraspecific variation is thought to be the
progenitor of the cultivated rice species Oryza sativa with two ecotypes, japonica and indica …

Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair

L Cappadocia, A Marechal, JS Parent, E Lepage… - The Plant …, 2010 - academic.oup.com
DNA double-strand breaks are highly detrimental to all organisms and need to be quickly
and accurately repaired. Although several proteins are known to maintain plastid and …

Hairpins create minute inversions in non-coding regions of chloroplast DNA

SA Kelchner, JF Wendel - Current genetics, 1996 - Springer
Minute inversions (4 bp in length), associated with probable hairpin secondary structures,
were inferred from comparative analysis of rpl16 intron sequences from the chloroplast …

Genetic differentiation for nuclear, mitochondrial and chloroplast genomes in common wild rice (Oryza rufipogon Griff.) and cultivated rice (Oryza sativa L.)

C Sun, X Wang, A Yoshimura, K Doi - Theoretical and Applied Genetics, 2002 - Springer
The genetic differentiation of nuclear, mitochondrial (mt) and chloroplast (cp) genomes was
investigated by Southern and PCR analysis using 75 varieties of cultivated rice (Oryza sativa …

The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice

MS Masood, T Nishikawa, S Fukuoka, PK Njenga… - Gene, 2004 - Elsevier
We determined the complete nucleotide sequence of the chloroplast genome of wild rice,
Oryza nivara and compared it with the corresponding published sequence of relative …

Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HJ Kim, J Jung, N Singh, A Greenberg, JJ Doyle… - Rice, 2016 - Springer
Background Understanding population structure of the wild progenitor of Asian cultivated
rice (O. sativa), the Oryza rufipogon species complex (ORSC), is of interest to plant breeders …